Gene: Cfa000830
General Information
Structural Information
- Species Carpinus fangiana
- Gene Identifier Cfa000830
- Transcript Identifier Cfa000830.t1
- Gene Type Coding gene
- Location Cfa01 : 8674368-8680929 : negative
Gene Family Information
- ID HOM05D002690
- #Genes/#Species 256/98
- Phylogenetic origin
- ID ORTHO05D005709
- #Genes/#Species 153/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Cfa000830.t1
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006979 | ISO | PLAZA Integrative Orthology | response to oxidative stress | AT1G30460 |
| GO:0031124 | ISO | PLAZA Integrative Orthology | mRNA 3'-end processing | AT1G30460 |
| GO:0006378 | ISO | PLAZA Integrative Orthology | mRNA polyadenylation | AT1G30460 |
| GO:0006396 | ISO | PLAZA Integrative Orthology | RNA processing | AT1G30460 |
| GO:0043068 | ISO | PLAZA Integrative Orthology | positive regulation of programmed cell death | AT1G30460 |
| GO:1900363 | ISO | PLAZA Integrative Orthology | regulation of mRNA polyadenylation | AT1G30460 |
| GO:2000031 | ISO | PLAZA Integrative Orthology | regulation of salicylic acid mediated signaling pathway | AT1G30460 |
| GO:0034052 | ISO | PLAZA Integrative Orthology | positive regulation of plant-type hypersensitive response | AT1G30460 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G30460 |
| GO:0004519 | ISO | PLAZA Integrative Orthology | endonuclease activity | AT1G30460 |
| GO:0046872 | ISO | PLAZA Homology (enrichment) | metal ion binding | HOM05D002690 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G30460 |
| GO:0005516 | ISO | PLAZA Integrative Orthology | calmodulin binding | AT1G30460 |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0004521 | ISO | PLAZA Integrative Orthology | endoribonuclease activity | AT1G30460 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT1G30460 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G30460 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007275 | YTH domain |
| Mapman id | Description |
|---|---|
| 16.3.1.2.5 | RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component CPSF30/Yth1 |