Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p25470 Brassica napus
A02p02800 Brassica napus
A05p44660 Brassica napus
A06p19540 Brassica napus
Aa31LG11G14540 Aethionema arabicum
Aa31LG11G710 Aethionema arabicum
Aa31LG4G16760 Aethionema arabicum
Actinidia04956 Actinidia chinensis
Actinidia06050 Actinidia chinensis
Actinidia33036 Actinidia chinensis
Actinidia36055 Actinidia chinensis
Ah.02g112850 Amaranthus hybridus
Ah.11g046230 Amaranthus hybridus
AL3G10880 Arabidopsis lyrata
AL5G27490 Arabidopsis lyrata
AL6G25760 Arabidopsis lyrata
Aqoxy232s004 Aquilegia oxysepala
Aqoxy3G00873 Aquilegia oxysepala
Aqoxy3G03137 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2L64QD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C6R171 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PT9M9B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q67Z2R Arachis hypogaea
AT3G01330 Arabidopsis thaliana
AT3G48160 Arabidopsis thaliana
AT5G14960 Arabidopsis thaliana
ATR0712G135 Amborella trichopoda
Atru.chr6.2163 Acer truncatum
Atru.chr9.2396 Acer truncatum
AUR62008287 Chenopodium quinoa
AUR62031051 Chenopodium quinoa
BcaB01g00841 Brassica carinata
BcaB02g10671 Brassica carinata
BcaC03g13441 Brassica carinata
BcaC05g30406 Brassica carinata
BcaC05g30469 Brassica carinata
BcaC07g39297 Brassica carinata
BcaC09g49850 Brassica carinata
BolC1t03164H Brassica oleracea
BolC2t06673H Brassica oleracea
BolC3t19156H Brassica oleracea
BolC5t35140H Brassica oleracea
BolC8t49942H Brassica oleracea
BraA01t02466Z Brassica rapa
BraA02t05253Z Brassica rapa
BraA05t23191Z Brassica rapa
BraA06t25033Z Brassica rapa
C01p31920 Brassica napus
C02p07420 Brassica napus
C03p69030 Brassica napus
C08p23040 Brassica napus
C09p75240 Brassica napus
CAN.G206.69 Capsicum annuum
CAN.G853.21 Capsicum annuum
CANSAT80G1393 Cannabis sativa
CARHR075650 Cardamine hirsuta
CARHR156880 Cardamine hirsuta
CARHR198350 Cardamine hirsuta
Carub.0003s0076 Capsella rubella
Carub.0005s1426 Capsella rubella
Carub.0006s1312 Capsella rubella
Ca_21879_v3 Cicer arietinum L.
Ca_21887_v3 Cicer arietinum L.
CBR_g40769 Chara braunii
Cc04_g15910 Coffea canephora
Cc06_g20570 Coffea canephora
CDE04G0204 Ceratophyllum demersum
CDE06G1354 Ceratophyllum demersum
CDE06G1399 Ceratophyllum demersum
Cfa007481 Carpinus fangiana
Ciclev10018041m.g Citrus clementina
Ciclev10020979m.g Citrus clementina
CiPaw.03G033200 Carya illinoinensis
CiPaw.11G032500 Carya illinoinensis
CiPaw.12G022800 Carya illinoinensis
ClCG01G014130 Citrullus lanatus
ClCG06G016660 Citrullus lanatus
COL.COLO4_21435 Corchorus olitorius
COL.COLO4_27010 Corchorus olitorius
COL.COLO4_37023 Corchorus olitorius
Cpa.g.sc14.76 Carica papaya
Cpa.g.sc35.34 Carica papaya
CsaV3_1G001850 Cucumis sativus L.
CsaV3_1G008200 Cucumis sativus L.
CsaV3_1G024370 Cucumis sativus L.
CSS0015559 Camellia sinensis var. sinensis
CSS0035388 Camellia sinensis var. sinensis
CSS0038871 Camellia sinensis var. sinensis
CSS0039267 Camellia sinensis var. sinensis
DCAR_011188 Daucus carota
DCAR_016509 Daucus carota
DCAR_022045 Daucus carota
DCAR_022046 Daucus carota
DCAR_022047 Daucus carota
DCAR_022048 Daucus carota
Dinv02659 Davidia involucrata
Dinv20702 Davidia involucrata
Dinv33680 Davidia involucrata
Duzib084G0382 Durio zibethinus
Duzib187G0571 Durio zibethinus
Duzib205G0188 Durio zibethinus
ECA246G1688 Erigeron canadensis
ECA246G3847 Erigeron canadensis
EL10Ac5g10837 Beta vulgaris
Eucgr.I01881 Eucalyptus grandis
Eucgr.K02883 Eucalyptus grandis
FAN04G2699 Fragaria x ananassa
FAN08G2438 Fragaria x ananassa
FAN11G2238 Fragaria x ananassa
FAN13G2014 Fragaria x ananassa
FAN16G1620 Fragaria x ananassa
FAN18G3284 Fragaria x ananassa
FAN21G0737 Fragaria x ananassa
FAN25G1855 Fragaria x ananassa
FvH4_3g21790 Fragaria vesca
FvH4_5g16330 Fragaria vesca
Glyma.04G178300 Glycine max
Glyma.05G033400 Glycine max
Glyma.06G186800 Glycine max
Glyma.17G093600 Glycine max
Gohir.A08G095300 Gossypium hirsutum
Gohir.A09G024100 Gossypium hirsutum
Gohir.D08G106800 Gossypium hirsutum
Gohir.D09G023300 Gossypium hirsutum
Gorai.004G114000 Gossypium raimondii
Gorai.006G027400 Gossypium raimondii
GSVIVG01007832001 Vitis vinifera
GSVIVG01032583001 Vitis vinifera
HanXRQChr05g0155451 Helianthus annuus
HanXRQChr13g0394091 Helianthus annuus
HanXRQChr15g0474311 Helianthus annuus
HanXRQChr17g0547191 Helianthus annuus
Haze_07433 Corylus avellana
Haze_14616 Corylus avellana
Hma1.2p1_0572F.1_g181000 Hydrangea macrophylla
HPP92_010548 Vanilla planifolia
Hund02709 Selenicereus undatus
Lalb_Chr06g0165591 Lupinus albus
Lalb_Chr07g0182511 Lupinus albus
Lalb_Chr12g0201331 Lupinus albus
Lalb_Chr12g0201341 Lupinus albus
Lalb_Chr13g0297981 Lupinus albus
Lj1g0001050 Lotus japonicus
Lj4g0015995 Lotus japonicus
Lj5A120G54 Lonicera japonica
Lsat_1_v5_gn_0_24320 Lactuca sativa
Lsat_1_v5_gn_5_17941 Lactuca sativa
Manes.06G100000 Manihot esculenta
Manes.14G070800 Manihot esculenta
Manes.17G119400 Manihot esculenta
Mapoly0159s0029 Marchantia polymorpha
MBI19_g05225_MAGBIO Magnolia biondii
MCO14G130 Micromonas commoda
MD06G1181700 Malus domestica
MD14G1187600 Malus domestica
Medtr4g106540 Medicago truncatula
MELO3C002236.2 Cucumis melo
MELO3C017127.2 Cucumis melo
MELO3C032653.2 Cucumis melo
Migut.D01566 Erythranthe guttata
Migut.H00175 Erythranthe guttata
Migut.H00971 Erythranthe guttata
Migut.I00063 Erythranthe guttata
Migut.L00934 Erythranthe guttata
Migut.O00344 Erythranthe guttata
MSTRG.11430 Avicennia marina
MSTRG.23083 Avicennia marina
MSTRG.3201 Avicennia marina
Nitab4.5_0000642g0310 Nicotiana tabacum
Nitab4.5_0000642g0320 Nicotiana tabacum
Nitab4.5_0004905g0060 Nicotiana tabacum
Nitab4.5_0007586g0020 Nicotiana tabacum
Nitab4.5_0010004g0020 Nicotiana tabacum
Nn4g22935 Nelumbo nucifera
Oeu016331.1 Olea europaea
Oeu018526.1 Olea europaea
Os02g0739700 Oryza sativa ssp. japonica
Os06g0245900 Oryza sativa ssp. japonica
Peaxi162Scf00017g02335 Petunia axillaris
Peaxi162Scf00129g00736 Petunia axillaris
PGR044G1662 Punica granatum
PGR142G2233 Punica granatum
PGSC0003DMG400001296 Solanum tuberosum
PGSC0003DMG402024469 Solanum tuberosum
Phvul.003G196600 Phaseolus vulgaris
Phvul.009G182500 Phaseolus vulgaris
Potri.012G075300 Populus trichocarpa
Potri.015G070300 Populus trichocarpa
Pp3c19_18240 Physcomitrium patens
Pp3c21_13480 Physcomitrium patens
Pp3c22_10160 Physcomitrium patens
PRCOL_00004872 Prasinoderma coloniale
PRCOL_00005746 Prasinoderma coloniale
Prupe.5G180000 Prunus persica
Psat4g055200 Pisum sativum
PSO013G0055 Papaver somniferum
PSO161G0079 Papaver somniferum
PSO832G3368 Papaver somniferum
QL10p012275 Quercus lobata
RcHm_v2.0_Chr2g0100091 Rosa chinensis
RcHm_v2.0_Chr2g0131211 Rosa chinensis
RcHm_v2.0_Chr2g0131231 Rosa chinensis
RcHm_v2.0_Chr5g0036461 Rosa chinensis
RcHm_v2.0_Chr5g0037341 Rosa chinensis
RcHm_v2.0_Chr5g0067381 Rosa chinensis
RcHm_v2.0_Chr6g0286771 Rosa chinensis
RcHm_v2.0_Chr7g0179801 Rosa chinensis
RcHm_v2.0_Chr7g0214071 Rosa chinensis
RcHm_v2.0_Chr7g0220421 Rosa chinensis
Sabra12G0053600 Salix brachista
SalBow1G1745 Salvia bowleyana
SalBow5G5244 Salvia bowleyana
Sc04g0002100 Simmondsia chinensis
Sed0017751 Sechium edule
Sed0027046 Sechium edule
Sed0027252 Sechium edule
SEGI_09373 Sequoiadendron giganteum
SGA_v2.0_scaffold135G34820 Striga asiatica
SGA_v2.0_scaffold25G10867 Striga asiatica
SGA_v2.0_scaffold467G52034 Striga asiatica
SHI19856 Sapria himalayana
SMO239G0006 Selaginella moellendorffii
Solyc02g087310.3 Solanum lycopersicum
Solyc03g113760.3 Solanum lycopersicum
Sopen02g032070 Solanum pennellii
Sopen03g032810 Solanum pennellii
Sp3g00740 Schrenkiella parvula
Sp5g13880 Schrenkiella parvula
Sp6g29080 Schrenkiella parvula
TAR374G1282 Trochodendron aralioides
TAR629G0456 Trochodendron aralioides
THA.LOC104818221 Tarenaya hassleriana
THA.LOC104821057 Tarenaya hassleriana
THA.LOC104821470 Tarenaya hassleriana
Thecc.03G003600 Theobroma cacao
Thecc.03G003900 Theobroma cacao
Thecc.04G066100 Theobroma cacao
Thhalv10010430m.g Eutrema salsugineum
Thhalv10013977m.g Eutrema salsugineum
Thhalv10021032m.g Eutrema salsugineum
TPR.G37576 Trifolium pratense
TWI15G0035 Tripterygium wilfordii
TWI36G1395 Tripterygium wilfordii
TWI56G1389 Tripterygium wilfordii
TWI60G1331 Tripterygium wilfordii
unitig_26.g9629 Utricularia gibba
unitig_749.g13459 Utricularia gibba
vmacro05782 Vaccinium macrocarpon
vmacro19353 Vaccinium macrocarpon
vmacro19750 Vaccinium macrocarpon
VMungo1215G0659 Vigna mungo
VMungo1309G1082 Vigna mungo
Zm00001eb046180 Zea mays
Zm00001eb194770 Zea mays
Zm00001eb220210 Zea mays
Zm00001eb254070 Zea mays
Zm00001eb280090 Zea mays
Zm00001eb311880 Zea mays
Zm00001eb373690 Zea mays
Zm00001eb379690 Zea mays
Zm00001eb431380 Zea mays

User provided reference genes

Program Settings