Gene: AT3G48160

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G48160
  • Transcript Identifier AT3G48160.2
  • Gene Type Coding gene
  • Location Chr3 : 17783641-17785846 : positive

Gene Family Information

  • ID HOM05D002622
  • #Genes/#Species 261/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G48160.2
  • symbol DEL1
  • Alias E2FE,E2L3,E2F-LIKE 3
  • uniprot Q8LSZ4

Descriptions

  • Description DP-E2F-like 1
  • Computational description DP-E2F-like 1 (DEL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: DP-E2F-like protein 3 (TAIR:AT3G01330.1); Has 1181 Blast hits to 868 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 721; Fungi - 9; Plants - 301; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
  • Computational description DP-E2F-like 1 (DEL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: DP-E2F-like protein 3 (TAIR:AT3G01330.1); Has 1182 Blast hits to 869 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 9; Plants - 301; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
IEA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II1
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0007049
IEA
GOA Databasecell cycle
GO:0032876
IGI
Gene Ontologynegative regulation of DNA endoreduplication2
GO:0042023
IMP
Gene OntologyDNA endoreduplication3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000978
IEA
GOA DatabaseRNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000978
IBA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding1
GO:0000978
IEA
InterProRNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IDA
Gene OntologyDNA binding4
GO:0000981
IBA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific1
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus4
GO:0005667
IEA
GOA Databasetranscription regulator complex
GO:0005667
IEA
InterProtranscription regulator complex
GO:0090575
IBA
Gene OntologyRNA polymerase II transcription regulator complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036390 Winged helix DNA-binding domain superfamily
IPR003316 E2F/DP family, winged-helix DNA-binding domain
IPR015633 E2F Family
IPR036388 Winged helix-like DNA-binding domain superfamily
Mapman id Description
13.1.2.3 Cell cycle organisation.cell cycle control.regulation.transcription factor (DEL)
15.5.10 RNA biosynthesis.transcriptional regulation.transcription factor (E2F)