Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p07260 Brassica napus
A08p08060 Brassica napus
A08p08070 Brassica napus
A08p19020 Brassica napus
Aa31LG2G19450 Aethionema arabicum
Aa31LG6G8860 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1780 Anthoceros agrestis
Actinidia03511 Actinidia chinensis
Actinidia29419 Actinidia chinensis
Actinidia39462 Actinidia chinensis
Ah.05g178200 Amaranthus hybridus
Ah.15g095720 Amaranthus hybridus
AL1G50570 Arabidopsis lyrata
AL7G21160 Arabidopsis lyrata
Aqoxy2G01195 Aquilegia oxysepala
Aqoxy6G00130 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.11CA21 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B6XGEU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EQ64S7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GQH6M1 Arachis hypogaea
AT1G35680 Arabidopsis thaliana
AT4G30930 Arabidopsis thaliana
ATR0709G076 Amborella trichopoda
ATR0737G004 Amborella trichopoda
Atru.chr13.1774 Acer truncatum
AUR62004644 Chenopodium quinoa
AUR62009779 Chenopodium quinoa
AUR62022692 Chenopodium quinoa
AUR62039224 Chenopodium quinoa
AUR62040350 Chenopodium quinoa
BcaB03g12666 Brassica carinata
BcaB04g17836 Brassica carinata
BcaC01g01132 Brassica carinata
BcaC07g37514 Brassica carinata
BcaC09g51879 Brassica carinata
BcaNung01554 Brassica carinata
BcaNung03428 Brassica carinata
BolC1t00791H Brassica oleracea
BolC3t21153H Brassica oleracea
BolC7t46286H Brassica oleracea
BolC8t47836H Brassica oleracea
BraA01t00675Z Brassica rapa
BraA08t32828Z Brassica rapa
BraA08t33863Z Brassica rapa
C01p08020 Brassica napus
C03p88440 Brassica napus
CAN.G1164.33 Capsicum annuum
CAN.G1164.38 Capsicum annuum
CAN.G199.12 Capsicum annuum
CANSAT25G2905 Cannabis sativa
CANSAT35G0869 Cannabis sativa
CARHR034470 Cardamine hirsuta
CARHR238820 Cardamine hirsuta
Carub.0001s3335 Capsella rubella
Carub.0007s0962 Capsella rubella
Ca_09283_v3 Cicer arietinum L.
Ca_10617_v3 Cicer arietinum L.
Cc00_g18220 Coffea canephora
Cc07_g20950 Coffea canephora
CDE02G3988 Ceratophyllum demersum
CDE08G1028 Ceratophyllum demersum
CDE08G1114 Ceratophyllum demersum
Cfa000461 Carpinus fangiana
Cfa013851 Carpinus fangiana
Cfa017079 Carpinus fangiana
Ciclev10002401m.g Citrus clementina
Ciclev10016378m.g Citrus clementina
CiPaw.07G159600 Carya illinoinensis
CiPaw.08G059200 Carya illinoinensis
CiPaw.10G048300 Carya illinoinensis
ClCG08G009370 Citrullus lanatus
ClCG09G010590 Citrullus lanatus
COL.COLO4_31470 Corchorus olitorius
COL.COLO4_32916 Corchorus olitorius
Cpa.g.c46061 Carica papaya
Cpa.g.sc27.26 Carica papaya
Cre06.g299000 Chlamydomonas reinhardtii
Cre09.g388550 Chlamydomonas reinhardtii
CsaV3_6G031500 Cucumis sativus L.
CsaV3_7G023770 Cucumis sativus L.
CSS0040863 Camellia sinensis var. sinensis
CSS0041037 Camellia sinensis var. sinensis
DCAR_001046 Daucus carota
DCAR_008040 Daucus carota
Dinv03385 Davidia involucrata
Dinv07561 Davidia involucrata
Dinv16279 Davidia involucrata
Dinv40563 Davidia involucrata
Dinv41712 Davidia involucrata
Duzib160G0607 Durio zibethinus
Duzib177G0794 Durio zibethinus
ECA234G4695 Erigeron canadensis
ECA247G2743 Erigeron canadensis
EL10Ac1g00084 Beta vulgaris
EL10Ac7g15805 Beta vulgaris
Eucgr.F02613 Eucalyptus grandis
Eucgr.L02565 Eucalyptus grandis
FAN04G2022 Fragaria x ananassa
FAN08G0056 Fragaria x ananassa
FAN11G2420 Fragaria x ananassa
FAN13G3254 Fragaria x ananassa
FAN16G2037 Fragaria x ananassa
FAN18G4362 Fragaria x ananassa
FAN21G1299 Fragaria x ananassa
FAN25G2395 Fragaria x ananassa
FvH4_3g09190 Fragaria vesca
FvH4_4g00950 Fragaria vesca
FvH4_5g27380 Fragaria vesca
Glyma.07G196700 Glycine max
Glyma.10G216700 Glycine max
Glyma.13G179500 Glycine max
Glyma.20G175300 Glycine max
Gohir.A05G161600 Gossypium hirsutum
Gohir.A05G274800 Gossypium hirsutum
Gohir.A06G126800 Gossypium hirsutum
Gohir.D05G164400 Gossypium hirsutum
Gohir.D05G277100 Gossypium hirsutum
Gohir.D06G131700 Gossypium hirsutum
Gorai.009G169600 Gossypium raimondii
Gorai.009G290100 Gossypium raimondii
Gorai.010G153500 Gossypium raimondii
GSVIVG01005209001 Vitis vinifera
GSVIVG01005550001 Vitis vinifera
GSVIVG01026890001 Vitis vinifera
GSVIVG01031364001 Vitis vinifera
HanXRQChr04g0107531 Helianthus annuus
HanXRQChr10g0279261 Helianthus annuus
HanXRQChr10g0295981 Helianthus annuus
HanXRQChr12g0362931 Helianthus annuus
Haze_06456 Corylus avellana
Haze_21120 Corylus avellana
Haze_22524 Corylus avellana
Hma1.2p1_0162F.1_g072260 Hydrangea macrophylla
Hma1.2p1_0785F.1_g217440 Hydrangea macrophylla
HPP92_023973 Vanilla planifolia
HPP92_024649 Vanilla planifolia
HPP92_024654 Vanilla planifolia
Hund16798 Selenicereus undatus
Hund20876 Selenicereus undatus
Lalb_Chr05g0218471 Lupinus albus
Lalb_Chr06g0162041 Lupinus albus
Lalb_Chr16g0383761 Lupinus albus
Lalb_Chr21g0305791 Lupinus albus
Lj2A288T68 Lonicera japonica
Lj4g0002983 Lotus japonicus
Lj4P497T32 Lonicera japonica
Lj4P502T23 Lonicera japonica
Lj5g0018752 Lotus japonicus
Lsat_1_v5_gn_1_10420 Lactuca sativa
Lsat_1_v5_gn_4_53101 Lactuca sativa
Manes.02G192100 Manihot esculenta
Manes.16G027700 Manihot esculenta
Mapoly0034s0066 Marchantia polymorpha
MBI06_g04175_MAGBIO Magnolia biondii
MCO01G656 Micromonas commoda
MCO11G349 Micromonas commoda
MD05G1312600 Malus domestica
MD05G1339700 Malus domestica
MD08G1247900 Malus domestica
MD10G1294400 Malus domestica
MD15G1442600 Malus domestica
Medtr1g096460 Medicago truncatula
Medtr2g019820 Medicago truncatula
Medtr2g058400 Medicago truncatula
Medtr7g111750 Medicago truncatula
MELO3C024121.2 Cucumis melo
MELO3C026533.2 Cucumis melo
Migut.C01254 Erythranthe guttata
Migut.M01140 Erythranthe guttata
MSTRG.1523 Avicennia marina
MSTRG.15885 Avicennia marina
Nitab4.5_0000119g0010 Nicotiana tabacum
Nitab4.5_0000303g0130 Nicotiana tabacum
Nitab4.5_0000444g0100 Nicotiana tabacum
Nitab4.5_0002500g0030 Nicotiana tabacum
Nitab4.5_0003432g0100 Nicotiana tabacum
Nitab4.5_0007074g0030 Nicotiana tabacum
Nn1g04088 Nelumbo nucifera
Nn1g04092 Nelumbo nucifera
Nn5g27692 Nelumbo nucifera
Oeu039616.1 Olea europaea
Oeu050845.1 Olea europaea
Oeu050848.1 Olea europaea
Os02g0259600 Oryza sativa ssp. japonica
Os05g0557800 Oryza sativa ssp. japonica
Peaxi162Scf00268g01132 Petunia axillaris
Peaxi162Scf00661g00027 Petunia axillaris
PGR042G0493 Punica granatum
PGR102G0289 Punica granatum
PGSC0003DMG400026078 Solanum tuberosum
PGSC0003DMG400029725 Solanum tuberosum
Phvul.002G233700 Phaseolus vulgaris
Phvul.007G089400 Phaseolus vulgaris
Potri.013G112900 Populus trichocarpa
Potri.015G095700 Populus trichocarpa
Potri.019G083400 Populus trichocarpa
Pp3c3_5690 Physcomitrium patens
PRCOL_00000003 Prasinoderma coloniale
Prupe.3G136100 Prunus persica
Prupe.4G047500 Prunus persica
Psat5g032360 Pisum sativum
Psat6g187560 Pisum sativum
PSO017G4639 Papaver somniferum
PSO063G2260 Papaver somniferum
PSO063G5517 Papaver somniferum
PSO782G3678 Papaver somniferum
QL02p033755 Quercus lobata
QL02p100868 Quercus lobata
QL05p040615 Quercus lobata
RcHm_v2.0_Chr5g0005961 Rosa chinensis
RcHm_v2.0_Chr5g0005971 Rosa chinensis
RcHm_v2.0_Chr5g0008411 Rosa chinensis
RcHm_v2.0_Chr7g0218651 Rosa chinensis
Rhsim02G0130300 Rhododendron simsii
Rhsim11G0058800 Rhododendron simsii
Sabra11G0036500 Salix brachista
Sabra13G0095800 Salix brachista
Sabra15G0116600 Salix brachista
Sabra19G0094800 Salix brachista
SalBow4G1199 Salvia bowleyana
SalBow7G4636 Salvia bowleyana
SalBow8G0476 Salvia bowleyana
SalBow8G2454 Salvia bowleyana
Sc17g0006180 Simmondsia chinensis
Sc26g0000400 Simmondsia chinensis
Sed0002933 Sechium edule
Sed0011110 Sechium edule
Sed0016491 Sechium edule
Sed0016943 Sechium edule
Sed0018877 Sechium edule
SEGI_14558 Sequoiadendron giganteum
SGA_v2.0_scaffold118G32477 Striga asiatica
SGA_v2.0_scaffold22G09715 Striga asiatica
SMO117G0017 Selaginella moellendorffii
Solyc02g078200.4 Solanum lycopersicum
Solyc06g065390.4 Solanum lycopersicum
Sopen02g023060 Solanum pennellii
Sopen06g023870 Solanum pennellii
Sp1g30390 Schrenkiella parvula
Sp7g28800 Schrenkiella parvula
TAR369G0008 Trochodendron aralioides
TAR381G1561 Trochodendron aralioides
TAR626G1106 Trochodendron aralioides
TAR629G3359 Trochodendron aralioides
THA.LOC104807026 Tarenaya hassleriana
THA.LOC104813103 Tarenaya hassleriana
THA.LOC104819903 Tarenaya hassleriana
Thecc.06G187400 Theobroma cacao
Thecc.08G183700 Theobroma cacao
Thhalv10001835m.g Eutrema salsugineum
Thhalv10025988m.g Eutrema salsugineum
TPR.G1610 Trifolium pratense
TWI32G0376 Tripterygium wilfordii
TWI38G1171 Tripterygium wilfordii
unitig_748.g7678 Utricularia gibba
vmacro00764 Vaccinium macrocarpon
vmacro15907 Vaccinium macrocarpon
VMungo0251G3021 Vigna mungo
VMungo0720G2219 Vigna mungo
Zm00001eb165970 Zea mays
Zm00001eb204010 Zea mays
Zm00001eb237980 Zea mays
Zm00001eb295500 Zea mays
Zm00001eb343340 Zea mays

User provided reference genes

Program Settings