Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p10580 Brassica napus
A02p13000 Brassica napus
Aa31LG2G2260 Aethionema arabicum
Aa31LG3G9940 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5759 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1529 Anthoceros agrestis
Actinidia05620 Actinidia chinensis
Actinidia08716 Actinidia chinensis
Actinidia34286 Actinidia chinensis
Ah.13g071000 Amaranthus hybridus
Ah.14g089380 Amaranthus hybridus
AL2G19710 Arabidopsis lyrata
AL8G29210 Arabidopsis lyrata
Aqoxy1G02517 Aquilegia oxysepala
Aqoxy5G04389 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.B9F9XG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DLGH4W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HMHY7M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RSL1D2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TZ1XN1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UAEH3Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YSF7LC Arachis hypogaea
AT1G65070 Arabidopsis thaliana
AT5G54090 Arabidopsis thaliana
ATR0579G153 Amborella trichopoda
ATR0680G182 Amborella trichopoda
ATR0721G080 Amborella trichopoda
Atru.BG.303.p Acer truncatum
Atru.chr12.2507 Acer truncatum
Atru.chr12.2530 Acer truncatum
AUR62005953 Chenopodium quinoa
AUR62014804 Chenopodium quinoa
AUR62016995 Chenopodium quinoa
AUR62028111 Chenopodium quinoa
BcaB02g09634 Brassica carinata
BcaB05g22108 Brassica carinata
BcaB05g24079 Brassica carinata
BcaC01g02455 Brassica carinata
BcaC01g05095 Brassica carinata
BcaC03g14353 Brassica carinata
BcaC03g14672 Brassica carinata
BolC2t07896H Brassica oleracea
BolC2t08252H Brassica oleracea
BolC3t15388H Brassica oleracea
BolC3t18713H Brassica oleracea
BraA02t06123Z Brassica rapa
BraA02t06356Z Brassica rapa
C02p17660 Brassica napus
C02p21120 Brassica napus
C03p30400 Brassica napus
C03p64550 Brassica napus
CAN.G1164.16 Capsicum annuum
CAN.G303.52 Capsicum annuum
CANSAT21G0133 Cannabis sativa
CANSAT35G1983 Cannabis sativa
CARHR053870 Cardamine hirsuta
CARHR267280 Cardamine hirsuta
Carub.0002s1037 Capsella rubella
Carub.0008s1437 Capsella rubella
Ca_05547_v3 Cicer arietinum L.
Ca_18537_v3 Cicer arietinum L.
CBR_g16855 Chara braunii
CBR_g37825 Chara braunii
CBR_g57073 Chara braunii
Cc01_g06440 Coffea canephora
Cc02_g13220 Coffea canephora
Cc02_g13230 Coffea canephora
Cc05_g07920 Coffea canephora
CDE02G2212 Ceratophyllum demersum
CDE02G3254 Ceratophyllum demersum
CDE02G3584 Ceratophyllum demersum
CDE09G0049 Ceratophyllum demersum
Cfa000431 Carpinus fangiana
Cfa012930 Carpinus fangiana
Cfa016132 Carpinus fangiana
Ciclev10014268m.g Citrus clementina
Ciclev10018840m.g Citrus clementina
CiPaw.05G208400 Carya illinoinensis
CiPaw.10G047500 Carya illinoinensis
ClCG03G005960 Citrullus lanatus
ClCG07G009710 Citrullus lanatus
ClCG07G009720 Citrullus lanatus
ClCG07G009730 Citrullus lanatus
COL.COLO4_14395 Corchorus olitorius
Cpa.g.sc27.54 Carica papaya
Cpa.g.sc3.180 Carica papaya
Cre01.g014800 Chlamydomonas reinhardtii
Cre01.g040350 Chlamydomonas reinhardtii
CsaV3_1G012200 Cucumis sativus L.
CsaV3_4G009720 Cucumis sativus L.
CSS0030602 Camellia sinensis var. sinensis
CSS0041054 Camellia sinensis var. sinensis
CSS0043844 Camellia sinensis var. sinensis
DCAR_010560 Daucus carota
DCAR_028087 Daucus carota
Dinv07549 Davidia involucrata
Dinv17281 Davidia involucrata
Duzib084G0662 Durio zibethinus
Duzib235G0442 Durio zibethinus
ECA234G1348 Erigeron canadensis
EL10Ac3g05139 Beta vulgaris
EL10Ac8g20367 Beta vulgaris
Eucgr.D00632 Eucalyptus grandis
Eucgr.K00458 Eucalyptus grandis
FAN01G2729 Fragaria x ananassa
FAN03G0390 Fragaria x ananassa
FAN10G1460 Fragaria x ananassa
FAN10G2182 Fragaria x ananassa
FAN10G2813 Fragaria x ananassa
FAN10G4263 Fragaria x ananassa
FAN11G0332 Fragaria x ananassa
FAN16G0286 Fragaria x ananassa
FAN21G0967 Fragaria x ananassa
FvH4_3g09390 Fragaria vesca
FvH4_7g33260 Fragaria vesca
FvH4_7g33280 Fragaria vesca
Glyma.02G221300 Glycine max
Glyma.07G195700 Glycine max
Glyma.14G188800 Glycine max
Glyma.14G188900 Glycine max
Glyma.14G188950 Glycine max
Gohir.A10G024866 Gossypium hirsutum
Gohir.A10G024932 Gossypium hirsutum
Gohir.A12G245000 Gossypium hirsutum
Gohir.D10G025600 Gossypium hirsutum
Gohir.D12G245800 Gossypium hirsutum
Gorai.008G263400 Gossypium raimondii
Gorai.011G026900 Gossypium raimondii
GSVIVG01038675001 Vitis vinifera
HanXRQChr14g0452381 Helianthus annuus
HanXRQChr16g0517721 Helianthus annuus
Haze_00328 Corylus avellana
Haze_05739 Corylus avellana
Haze_05874 Corylus avellana
Haze_06485 Corylus avellana
Haze_18353 Corylus avellana
Hma1.2p1_0115F.1_g055690 Hydrangea macrophylla
Hma1.2p1_0115F.1_g055700 Hydrangea macrophylla
Hma1.2p1_0881F.1_g232050 Hydrangea macrophylla
Hma1.2p1_0881F.1_g232060 Hydrangea macrophylla
HPP92_007410 Vanilla planifolia
HPP92_020872 Vanilla planifolia
HPP92_028115 Vanilla planifolia
Hund21077 Selenicereus undatus
Hund23717 Selenicereus undatus
Lalb_Chr09g0327621 Lupinus albus
Lalb_Chr10g0103011 Lupinus albus
Lalb_Chr10g0103021 Lupinus albus
Lj1C1030G8 Lonicera japonica
Lj2C287G7 Lonicera japonica
Lj4g0015787 Lotus japonicus
Lj5g0011304 Lotus japonicus
LjContig00155g0000379 Lotus japonicus
Lsat_1_v5_gn_2_5220 Lactuca sativa
Lsat_1_v5_gn_3_16701 Lactuca sativa
Lsat_1_v5_gn_4_52780 Lactuca sativa
Manes.17G044100 Manihot esculenta
Manes.18G108000 Manihot esculenta
Mapoly0023s0121 Marchantia polymorpha
Mapoly0028s0103 Marchantia polymorpha
MBI04_g09825_MAGBIO Magnolia biondii
MBI18_g16997_MAGBIO Magnolia biondii
MCO04G146 Micromonas commoda
MCO15G337 Micromonas commoda
MD00G1095300 Malus domestica
MD07G1302400 Malus domestica
Medtr4g088920 Medicago truncatula
Medtr5g068600 Medicago truncatula
MELO3C002594.2 Cucumis melo
MELO3C024845.2 Cucumis melo
Migut.F00161 Erythranthe guttata
Migut.M01151 Erythranthe guttata
Nitab4.5_0000021g0180 Nicotiana tabacum
Nitab4.5_0004582g0020 Nicotiana tabacum
Nitab4.5_0019564g0010 Nicotiana tabacum
Nn1g04049 Nelumbo nucifera
Nn1g09652 Nelumbo nucifera
Oeu005075.2 Olea europaea
Oeu055378.1 Olea europaea
Os04g0680700 Oryza sativa ssp. japonica
Os10g0509000 Oryza sativa ssp. japonica
Peaxi162Scf00947g00117 Petunia axillaris
Peaxi162Scf01026g00257 Petunia axillaris
PGR004G2583 Punica granatum
PGR142G0839 Punica granatum
PGSC0003DMG400000575 Solanum tuberosum
PGSC0003DMG400022387 Solanum tuberosum
Phvul.002G228200 Phaseolus vulgaris
Phvul.008G188400 Phaseolus vulgaris
Potri.004G041900 Populus trichocarpa
Potri.012G005000 Populus trichocarpa
Pp3c17_13780 Physcomitrium patens
Pp3c17_13784 Physcomitrium patens
Pp3c5_20780 Physcomitrium patens
PRCOL_00005616 Prasinoderma coloniale
PRCOL_00007048 Prasinoderma coloniale
Prupe.2G321600 Prunus persica
Prupe.4G045200 Prunus persica
Psat0s1274g0040 Pisum sativum
Psat0s1274g0080 Pisum sativum
Psat7g096080 Pisum sativum
Psat7g096120 Pisum sativum
Psat7g112600 Pisum sativum
PSO063G0674 Papaver somniferum
PSO675G0269 Papaver somniferum
PSO782G1442 Papaver somniferum
PSO782G3476 Papaver somniferum
QL05p039941 Quercus lobata
QL09p006081 Quercus lobata
RcHm_v2.0_Chr1g0334571 Rosa chinensis
RcHm_v2.0_Chr1g0383251 Rosa chinensis
RcHm_v2.0_Chr5g0008191 Rosa chinensis
Rhsim03G0218100 Rhododendron simsii
Rhsim13G0176900 Rhododendron simsii
Sabra04G0026000 Salix brachista
Sabra12G0000700 Salix brachista
Sabra12G0007000 Salix brachista
SalBow6G2866 Salvia bowleyana
Sc05g0007730 Simmondsia chinensis
Sc05g0007740 Simmondsia chinensis
Sc05g0007750 Simmondsia chinensis
Sc19g0000400 Simmondsia chinensis
Sed0019266 Sechium edule
Sed0021234 Sechium edule
SEGI_01713 Sequoiadendron giganteum
SEGI_06769 Sequoiadendron giganteum
SEGI_24867 Sequoiadendron giganteum
SEGI_27553 Sequoiadendron giganteum
SEGI_29257 Sequoiadendron giganteum
SGA_v2.0_scaffold100G29671 Striga asiatica
SGA_v2.0_scaffold323G48640 Striga asiatica
SGA_v2.0_scaffold332G48928 Striga asiatica
SGA_v2.0_scaffold44G16838 Striga asiatica
SMO239G0005 Selaginella moellendorffii
SMO361G0591 Selaginella moellendorffii
Solyc02g078390.3 Solanum lycopersicum
Solyc03g080010.3 Solanum lycopersicum
Sopen02g023250 Solanum pennellii
Sopen03g021730 Solanum pennellii
Sp5g19600 Schrenkiella parvula
Sp6g16120 Schrenkiella parvula
TAR375G1062 Trochodendron aralioides
TAR624G1243 Trochodendron aralioides
TAR624G1333 Trochodendron aralioides
THA.LOC104821785 Tarenaya hassleriana
THA.LOC104825164 Tarenaya hassleriana
Thecc.03G211600 Theobroma cacao
Thecc.06G189600 Theobroma cacao
Thhalv10012724m.g Eutrema salsugineum
Thhalv10022461m.g Eutrema salsugineum
TPR.G12122 Trifolium pratense
TPR.G15887 Trifolium pratense
TPR.G27024 Trifolium pratense
TPR.G40436 Trifolium pratense
TPR.G5823 Trifolium pratense
TPR.G5829 Trifolium pratense
TWI38G0664 Tripterygium wilfordii
TWI39G1073 Tripterygium wilfordii
unitig_32.g10980 Utricularia gibba
unitig_748.g7357 Utricularia gibba
vmacro06471 Vaccinium macrocarpon
VMungo0251G2893 Vigna mungo
VMungo0647G0390 Vigna mungo
VMungo0647G1466 Vigna mungo
VMungo0647G1626 Vigna mungo
VMungo0647G2508 Vigna mungo
Zm00001eb065920 Zea mays
Zm00001eb220610 Zea mays

User provided reference genes

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