Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p08340 Brassica napus
A01p16820 Brassica napus
A03p56080 Brassica napus
A06p35050 Brassica napus
A06p35060 Brassica napus
A08p21090 Brassica napus
Aa31LG2G20720 Aethionema arabicum
Aa31LG3G8650 Aethionema arabicum
Aa31LG3G8660 Aethionema arabicum
Aa31LG7G12290 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.619 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.2119 Anthoceros agrestis
Actinidia10006 Actinidia chinensis
Actinidia32865 Actinidia chinensis
Actinidia34107 Actinidia chinensis
Actinidia38459 Actinidia chinensis
Ah.05g176480 Amaranthus hybridus
Ah.09g231220 Amaranthus hybridus
AL7G22430 Arabidopsis lyrata
AL7G27550 Arabidopsis lyrata
Aqoxy7G00368 Aquilegia oxysepala
Aqoxy7G04013 Aquilegia oxysepala
Aqoxy7G04016 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.15I91Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1S342R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7IZY9W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BNX2MS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BTU0FN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q7VMJV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WE0IGR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WF8D84 Arachis hypogaea
AT4G25550 Arabidopsis thaliana
AT4G29820 Arabidopsis thaliana
ATR0051G051 Amborella trichopoda
ATR0680G416 Amborella trichopoda
Atru.chr1.468 Acer truncatum
Atru.chr7.1646 Acer truncatum
AUR62004322 Chenopodium quinoa
AUR62015993 Chenopodium quinoa
AUR62021200 Chenopodium quinoa
AUR62025112 Chenopodium quinoa
AUR62029018 Chenopodium quinoa
AUR62033322 Chenopodium quinoa
AUR62033337 Chenopodium quinoa
BcaB03g12476 Brassica carinata
BcaC06g32802 Brassica carinata
BcaC07g38199 Brassica carinata
BcaC09g50758 Brassica carinata
BcaC09g51760 Brassica carinata
BcaNung03700 Brassica carinata
BolC1t00926H Brassica oleracea
BolC1t02034H Brassica oleracea
BolC7t43902H Brassica oleracea
BolC7t45926H Brassica oleracea
BolC8t48623H Brassica oleracea
BraA01t00782Z Brassica rapa
BraA01t01636Z Brassica rapa
BraA03t14679Z Brassica rapa
BraA08t34059Z Brassica rapa
C01p09380 Brassica napus
C01p21100 Brassica napus
C07p14290 Brassica napus
C07p33880 Brassica napus
C07p54400 Brassica napus
C08p09550 Brassica napus
CAN.G11.40 Capsicum annuum
CAN.G166.9 Capsicum annuum
CAN.G352.11 Capsicum annuum
CAN.G490.24 Capsicum annuum
CANSAT21G0543 Cannabis sativa
CARHR232970 Cardamine hirsuta
CARHR237720 Cardamine hirsuta
Carub.0004s1481 Capsella rubella
Carub.0007s1543 Capsella rubella
Ca_10776_v3 Cicer arietinum L.
Cc02_g03070 Coffea canephora
Cc06_g11780 Coffea canephora
CDE05G1925 Ceratophyllum demersum
CDE06G0517 Ceratophyllum demersum
CDE08G1128 Ceratophyllum demersum
Cfa003045 Carpinus fangiana
Cfa008313 Carpinus fangiana
Cfa023966 Carpinus fangiana
Ciclev10005929m.g Citrus clementina
Ciclev10009459m.g Citrus clementina
CiPaw.03G105700 Carya illinoinensis
CiPaw.03G211200 Carya illinoinensis
CiPaw.04G070500 Carya illinoinensis
ClCG05G001670 Citrullus lanatus
ClCG11G001630 Citrullus lanatus
COL.COLO4_14301 Corchorus olitorius
COL.COLO4_18157 Corchorus olitorius
Cpa.g.sc107.45 Carica papaya
Cpa.g.sc18.227 Carica papaya
Cpa.g.sc18.228 Carica papaya
Cpa.g.sc371.3 Carica papaya
Cre10.g462700 Chlamydomonas reinhardtii
CsaV3_2G001320 Cucumis sativus L.
CsaV3_3G009050 Cucumis sativus L.
CSS0004362 Camellia sinensis var. sinensis
CSS0006662 Camellia sinensis var. sinensis
CSS0027300 Camellia sinensis var. sinensis
CSS0028621 Camellia sinensis var. sinensis
CSS0049968 Camellia sinensis var. sinensis
DCAR_009364 Daucus carota
DCAR_018193 Daucus carota
DCAR_025140 Daucus carota
DCAR_025141 Daucus carota
DCAR_028282 Daucus carota
Dinv32456 Davidia involucrata
Dinv35208 Davidia involucrata
Dinv42351 Davidia involucrata
Dinv43787 Davidia involucrata
Duzib084G0888 Durio zibethinus
Duzib150G0025 Durio zibethinus
Duzib168G2149 Durio zibethinus
Duzib205G1424 Durio zibethinus
ECA240G0763 Erigeron canadensis
ECA240G3636 Erigeron canadensis
EL10Ac1g00535 Beta vulgaris
EL10Ac8g19158 Beta vulgaris
Eucgr.A02797 Eucalyptus grandis
Eucgr.C03406 Eucalyptus grandis
Eucgr.E00176 Eucalyptus grandis
FAN01G1059 Fragaria x ananassa
FAN03G1094 Fragaria x ananassa
FAN03G1327 Fragaria x ananassa
FAN06G0261 Fragaria x ananassa
FAN06G2953 Fragaria x ananassa
FAN10G0111 Fragaria x ananassa
FAN19G0658 Fragaria x ananassa
FAN23G0711 Fragaria x ananassa
FAN26G0922 Fragaria x ananassa
FAN26G1857 Fragaria x ananassa
FAN26G2977 Fragaria x ananassa
FAN28G1595 Fragaria x ananassa
FvH4_1g08030 Fragaria vesca
FvH4_7g29390 Fragaria vesca
Glyma.09G066700 Glycine max
Glyma.10G236702 Glycine max
Glyma.15G172700 Glycine max
Glyma.20G157800 Glycine max
Gohir.A05G032000 Gossypium hirsutum
Gohir.A07G013200 Gossypium hirsutum
Gohir.A08G099800 Gossypium hirsutum
Gohir.A09G180800 Gossypium hirsutum
Gohir.D05G033500 Gossypium hirsutum
Gohir.D07G013000 Gossypium hirsutum
Gohir.D08G111000 Gossypium hirsutum
Gohir.D09G175600 Gossypium hirsutum
Gorai.001G013700 Gossypium raimondii
Gorai.004G119000 Gossypium raimondii
Gorai.006G197700 Gossypium raimondii
Gorai.009G033900 Gossypium raimondii
GSVIVG01015153001 Vitis vinifera
GSVIVG01026851001 Vitis vinifera
GSVIVG01028985001 Vitis vinifera
HanXRQChr09g0237921 Helianthus annuus
HanXRQChr13g0426371 Helianthus annuus
Haze_13722 Corylus avellana
Haze_13987 Corylus avellana
Haze_25950 Corylus avellana
Haze_26905 Corylus avellana
Hma1.2p1_0001F.1_g001580 Hydrangea macrophylla
Hma1.2p1_0270F.1_g108090 Hydrangea macrophylla
Hma1.2p1_0672F.1_g200920 Hydrangea macrophylla
Hma1.2p1_0672F.1_g200930 Hydrangea macrophylla
HPP92_025723 Vanilla planifolia
Hund04736 Selenicereus undatus
Hund11752 Selenicereus undatus
Hund16939 Selenicereus undatus
Hund25974 Selenicereus undatus
Hund27299 Selenicereus undatus
Lalb_Chr06g0161091 Lupinus albus
Lalb_Chr11g0074451 Lupinus albus
Lj4A288G21 Lonicera japonica
Lj5g0026018 Lotus japonicus
Lj6g0021060 Lotus japonicus
Lj8A25T70 Lonicera japonica
Lj9C581T1 Lonicera japonica
Lsat_1_v5_gn_2_131840 Lactuca sativa
Lsat_1_v5_gn_3_136540 Lactuca sativa
Lsat_1_v5_gn_7_34701 Lactuca sativa
Manes.03G037100 Manihot esculenta
Manes.14G026500 Manihot esculenta
Mapoly0030s0108 Marchantia polymorpha
Mapoly0030s0134 Marchantia polymorpha
MBI11_g07531_MAGBIO Magnolia biondii
MBI17_g35774_MAGBIO Magnolia biondii
MCO14G516 Micromonas commoda
MD01G1199900 Malus domestica
MD02G1085100 Malus domestica
MD07G1267800 Malus domestica
MD15G1212200 Malus domestica
Medtr1g100673 Medicago truncatula
Medtr2g040570 Medicago truncatula
MELO3C004637.2 Cucumis melo
MELO3C006125.2 Cucumis melo
Migut.F00346 Erythranthe guttata
Migut.F00347 Erythranthe guttata
Migut.F01123 Erythranthe guttata
Migut.L01529 Erythranthe guttata
MSTRG.8742 Avicennia marina
MSTRG.94 Avicennia marina
Nitab4.5_0000716g0130 Nicotiana tabacum
Nitab4.5_0001519g0210 Nicotiana tabacum
Nitab4.5_0002079g0020 Nicotiana tabacum
Nitab4.5_0002721g0010 Nicotiana tabacum
Nitab4.5_0006494g0010 Nicotiana tabacum
Nitab4.5_0013288g0010 Nicotiana tabacum
Nn1g01440 Nelumbo nucifera
Oeu021783.1 Olea europaea
Oeu022586.1 Olea europaea
Oeu049184.1 Olea europaea
Oeu051649.1 Olea europaea
Oeu056247.1 Olea europaea
Oeu062751.1 Olea europaea
Os04g0683100 Oryza sativa ssp. japonica
Os08g0398800 Oryza sativa ssp. japonica
Peaxi162Scf00132g01411 Petunia axillaris
Peaxi162Scf00494g00412 Petunia axillaris
Peaxi162Scf01464g00030 Petunia axillaris
PGR042G1367 Punica granatum
PGR044G1609 Punica granatum
PGSC0003DMG400018003 Solanum tuberosum
PGSC0003DMG400033870 Solanum tuberosum
PGSC0003DMG401014290 Solanum tuberosum
PGSC0003DMG402014290 Solanum tuberosum
Phvul.006G147400 Phaseolus vulgaris
Phvul.009G229700 Phaseolus vulgaris
Potri.006G146400 Populus trichocarpa
Potri.012G140301 Populus trichocarpa
Potri.015G143300 Populus trichocarpa
Pp3c8_3770 Physcomitrium patens
PRCOL_00003598 Prasinoderma coloniale
Prupe.2G293500 Prunus persica
Prupe.7G204500 Prunus persica
Psat1g131400 Pisum sativum
Psat6g199800 Pisum sativum
PSO210G0533 Papaver somniferum
PSO210G1180 Papaver somniferum
PSO210G2112 Papaver somniferum
PSO478G2436 Papaver somniferum
PSO782G2846 Papaver somniferum
QL02p061823 Quercus lobata
QL09p014348 Quercus lobata
RcHm_v2.0_Chr1g0377171 Rosa chinensis
RcHm_v2.0_Chr2g0094081 Rosa chinensis
Rhsim03G0180400 Rhododendron simsii
Rhsim05G0014300 Rhododendron simsii
Rhsim07G0017700 Rhododendron simsii
Sabra06G0115600 Salix brachista
Sabra12G0105300 Salix brachista
Sabra15G0153000 Salix brachista
SalBow1G0498 Salvia bowleyana
SalBow2G0464 Salvia bowleyana
Sc02g0002090 Simmondsia chinensis
Sc08g0008670 Simmondsia chinensis
Sc19g0001560 Simmondsia chinensis
Sed0002542 Sechium edule
Sed0005338 Sechium edule
Sed0015252 Sechium edule
SEGI_32071 Sequoiadendron giganteum
SGA_v2.0_scaffold21G09443 Striga asiatica
SGA_v2.0_scaffold44G16719 Striga asiatica
SGA_v2.0_scaffold60G21028 Striga asiatica
Solyc01g009620.3 Solanum lycopersicum
Solyc01g009630.3 Solanum lycopersicum
Solyc03g025880.3 Solanum lycopersicum
Solyc07g041000.4 Solanum lycopersicum
Sopen01g005150 Solanum pennellii
Sopen01g005160 Solanum pennellii
Sopen03g004690 Solanum pennellii
Sopen07g020130 Solanum pennellii
Sp7g23580 Schrenkiella parvula
Sp7g27630 Schrenkiella parvula
TAR374G1526 Trochodendron aralioides
TAR375G0249 Trochodendron aralioides
TAR624G0892 Trochodendron aralioides
TAR636G0987 Trochodendron aralioides
TAR636G2736 Trochodendron aralioides
THA.LOC104800254 Tarenaya hassleriana
THA.LOC104811985 Tarenaya hassleriana
THA.LOC104820017 Tarenaya hassleriana
THA.LOC104825098 Tarenaya hassleriana
THA.LOC104827596 Tarenaya hassleriana
Thecc.03G175600 Theobroma cacao
Thecc.09G083000 Theobroma cacao
Thhalv10026187m.g Eutrema salsugineum
Thhalv10026280m.g Eutrema salsugineum
TPR.G14346 Trifolium pratense
TPR.G18105 Trifolium pratense
TPR.G7710 Trifolium pratense
TWI14G0962 Tripterygium wilfordii
TWI14G1016 Tripterygium wilfordii
TWI23G0957 Tripterygium wilfordii
TWI34G1491 Tripterygium wilfordii
TWI39G0052 Tripterygium wilfordii
unitig_0.g2484 Utricularia gibba
unitig_0.g2780 Utricularia gibba
unitig_0.g2781 Utricularia gibba
unitig_52.g17749 Utricularia gibba
unitig_699.g19289 Utricularia gibba
vmacro06686 Vaccinium macrocarpon
vmacro13304 Vaccinium macrocarpon
vmacro17165 Vaccinium macrocarpon
VMungo0540G1179 Vigna mungo
VMungo1309G1216 Vigna mungo
Zm00001eb065770 Zea mays
Zm00001eb178700 Zea mays
Zm00001eb434010 Zea mays

User provided reference genes

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