Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p00210 Brassica napus
A10p27590 Brassica napus
Aa31LG2G15370 Aethionema arabicum
Aa31LG3G17240 Aethionema arabicum
Aa31LG3G17250 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2647 Anthoceros agrestis
Actinidia01381 Actinidia chinensis
Actinidia06136 Actinidia chinensis
Actinidia12223 Actinidia chinensis
Actinidia13184 Actinidia chinensis
Actinidia18047 Actinidia chinensis
Actinidia20100 Actinidia chinensis
Actinidia20520 Actinidia chinensis
Actinidia28440 Actinidia chinensis
Actinidia28474 Actinidia chinensis
Ah.01g023150 Amaranthus hybridus
Ah.01g023160 Amaranthus hybridus
Ah.02g123820 Amaranthus hybridus
Ah.02g123830 Amaranthus hybridus
AL3G49690 Arabidopsis lyrata
AL6G20300 Arabidopsis lyrata
Aqoxy6G00398 Aquilegia oxysepala
Aqoxy6G02085 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3GW0ZH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3LSP53 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.68MNY7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8K3Y1X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D340KN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D439DA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DVV8A4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JNSA3Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q6L7I5 Arachis hypogaea
AT2G16940 Arabidopsis thaliana
AT5G09880 Arabidopsis thaliana
ATR0584G217 Amborella trichopoda
ATR0661G124 Amborella trichopoda
Atru.chr4.668 Acer truncatum
Atru.chr5.3382 Acer truncatum
AUR62003636 Chenopodium quinoa
AUR62010021 Chenopodium quinoa
AUR62013011 Chenopodium quinoa
AUR62017946 Chenopodium quinoa
BcaB03g16427 Brassica carinata
BcaB05g21523 Brassica carinata
BcaB08g34678 Brassica carinata
BcaB08g37174 Brassica carinata
BcaC03g13282 Brassica carinata
BolC2t06375H Brassica oleracea
BolC9t59527H Brassica oleracea
BraA02t05005Z Brassica rapa
BraA10t44810Z Brassica rapa
C02p04130 Brassica napus
C03p57630 Brassica napus
C09p67650 Brassica napus
CAN.G341.13 Capsicum annuum
CANSAT01G1185 Cannabis sativa
CANSAT25G1049 Cannabis sativa
CARHR107220 Cardamine hirsuta
CARHR203460 Cardamine hirsuta
Carub.0003s3075 Capsella rubella
Carub.0006s0832 Capsella rubella
Ca_03303_v3 Cicer arietinum L.
Ca_16907_v3 Cicer arietinum L.
Ca_17669_v3 Cicer arietinum L.
CBR_g48379 Chara braunii
Cc07_g16800 Coffea canephora
Cc09_g09810 Coffea canephora
CDE02G0040 Ceratophyllum demersum
CDE02G1409 Ceratophyllum demersum
CDE06G1431 Ceratophyllum demersum
CDE08G1098 Ceratophyllum demersum
Cfa002792 Carpinus fangiana
Cfa005274 Carpinus fangiana
Cfa005277 Carpinus fangiana
Cfa025621 Carpinus fangiana
Ciclev10025229m.g Citrus clementina
Ciclev10027985m.g Citrus clementina
CiPaw.03G130900 Carya illinoinensis
CiPaw.04G088300 Carya illinoinensis
CiPaw.05G084300 Carya illinoinensis
CiPaw.06G120700 Carya illinoinensis
ClCG01G015790 Citrullus lanatus
ClCG02G003960 Citrullus lanatus
COL.COLO4_03414 Corchorus olitorius
COL.COLO4_17365 Corchorus olitorius
COL.COLO4_17366 Corchorus olitorius
COL.COLO4_31728 Corchorus olitorius
Cpa.g.sc20.102 Carica papaya
Cpa.g.sc72.39 Carica papaya
Cre04.g213905 Chlamydomonas reinhardtii
Cre17.g733208 Chlamydomonas reinhardtii
CsaV3_6G042060 Cucumis sativus L.
CsaV3_7G001150 Cucumis sativus L.
CSS0005319 Camellia sinensis var. sinensis
CSS0006511 Camellia sinensis var. sinensis
CSS0007259 Camellia sinensis var. sinensis
CSS0008788 Camellia sinensis var. sinensis
CSS0015316 Camellia sinensis var. sinensis
CSS0017135 Camellia sinensis var. sinensis
CSS0021653 Camellia sinensis var. sinensis
CSS0025036 Camellia sinensis var. sinensis
CSS0027399 Camellia sinensis var. sinensis
CSS0029617 Camellia sinensis var. sinensis
CSS0030152 Camellia sinensis var. sinensis
CSS0036397 Camellia sinensis var. sinensis
CSS0037552 Camellia sinensis var. sinensis
DCAR_001388 Daucus carota
DCAR_003181 Daucus carota
DCAR_014358 Daucus carota
Dinv02711 Davidia involucrata
Dinv14120 Davidia involucrata
Dinv19448 Davidia involucrata
Dinv41926 Davidia involucrata
Duzib147G1612 Durio zibethinus
Duzib187G1445 Durio zibethinus
Duzib248G1200 Durio zibethinus
Duzib264G0231 Durio zibethinus
ECA233G3575 Erigeron canadensis
ECA238G0526 Erigeron canadensis
ECA238G1352 Erigeron canadensis
ECA238G2527 Erigeron canadensis
EL10Ac6g15238 Beta vulgaris
EL10Ac9g21352 Beta vulgaris
Eucgr.I00287 Eucalyptus grandis
Eucgr.I00288 Eucalyptus grandis
Eucgr.I01450 Eucalyptus grandis
FAN15G0394 Fragaria x ananassa
FAN19G0610 Fragaria x ananassa
FAN23G2605 Fragaria x ananassa
FAN26G0991 Fragaria x ananassa
FAN28G1528 Fragaria x ananassa
FvH4_1g23920 Fragaria vesca
FvH4_2g15540 Fragaria vesca
Glyma.05G187000 Glycine max
Glyma.06G148700 Glycine max
Glyma.08G145400 Glycine max
Glyma.10G282400 Glycine max
Glyma.20G107100 Glycine max
Gohir.A01G002100 Gossypium hirsutum
Gohir.A02G137200 Gossypium hirsutum
Gohir.A03G205600 Gossypium hirsutum
Gohir.A11G223300 Gossypium hirsutum
Gohir.D01G001700 Gossypium hirsutum
Gohir.D02G226900 Gossypium hirsutum
Gohir.D03G047900 Gossypium hirsutum
Gohir.D11G227100 Gossypium hirsutum
Gorai.002G002300 Gossypium raimondii
Gorai.002G149800 Gossypium raimondii
Gorai.003G049000 Gossypium raimondii
Gorai.005G254800 Gossypium raimondii
GSVIVG01022281001 Vitis vinifera
GSVIVG01023997001 Vitis vinifera
GSVIVG01023998001 Vitis vinifera
HanXRQChr05g0158811 Helianthus annuus
HanXRQChr12g0374631 Helianthus annuus
HanXRQChr14g0445931 Helianthus annuus
Haze_25090 Corylus avellana
Haze_27451 Corylus avellana
Hma1.2p1_0032F.1_g019280 Hydrangea macrophylla
Hma1.2p1_1140F.1_g260900 Hydrangea macrophylla
HPP92_004408 Vanilla planifolia
HPP92_008338 Vanilla planifolia
HPP92_016146 Vanilla planifolia
HPP92_016158 Vanilla planifolia
Hund00016 Selenicereus undatus
Hund03504 Selenicereus undatus
Hund19617 Selenicereus undatus
Lalb_Chr06g0163681 Lupinus albus
Lalb_Chr07g0184661 Lupinus albus
Lalb_Chr07g0184671 Lupinus albus
Lalb_Chr08g0238731 Lupinus albus
Lalb_Chr11g0073641 Lupinus albus
Lalb_Chr11g0073651 Lupinus albus
Lalb_Chr11g0073661 Lupinus albus
Lalb_Chr13g0296361 Lupinus albus
Lj1g0010507 Lotus japonicus
Lj2A584G29 Lonicera japonica
Lj4g0014494 Lotus japonicus
Lj5g0028186 Lotus japonicus
Lj9A395G27 Lonicera japonica
Lj9C395T6 Lonicera japonica
Lsat_1_v5_gn_2_66660 Lactuca sativa
Lsat_1_v5_gn_3_128061 Lactuca sativa
Lsat_1_v5_gn_3_15561 Lactuca sativa
Lsat_1_v5_gn_5_37600 Lactuca sativa
Manes.04G071600 Manihot esculenta
Mapoly0067s0005 Marchantia polymorpha
MBI08_g30366_MAGBIO Magnolia biondii
MCO14G511 Micromonas commoda
MCO15G197 Micromonas commoda
MD01G1009800 Malus domestica
MD01G1009900 Malus domestica
MD01G1010000 Malus domestica
MD05G1123800 Malus domestica
MD10G1126500 Malus domestica
MD15G1339600 Malus domestica
Medtr3g095230 Medicago truncatula
Medtr5g037180 Medicago truncatula
Medtr8g092550 Medicago truncatula
MELO3C008019.2 Cucumis melo
MELO3C013338.2 Cucumis melo
Migut.B00067 Erythranthe guttata
Migut.H02465 Erythranthe guttata
Migut.L00053 Erythranthe guttata
MSTRG.19982 Avicennia marina
Nitab4.5_0002396g0030 Nicotiana tabacum
Nitab4.5_0004377g0050 Nicotiana tabacum
Nn1g06040 Nelumbo nucifera
Nn5g30821 Nelumbo nucifera
Oeu015559.3 Olea europaea
Oeu015838.1 Olea europaea
Oeu035201.3 Olea europaea
Oeu054924.1 Olea europaea
Os03g0153000 Oryza sativa ssp. japonica
Os10g0439600 Oryza sativa ssp. japonica
Peaxi162Scf00023g01329 Petunia axillaris
Peaxi162Scf00025g02825 Petunia axillaris
PGR119G1124 Punica granatum
PGR142G0364 Punica granatum
PGSC0003DMG400016920 Solanum tuberosum
Phvul.002G268000 Phaseolus vulgaris
Phvul.007G018500 Phaseolus vulgaris
Phvul.009G146500 Phaseolus vulgaris
Potri.004G177000 Populus trichocarpa
Potri.005G148100 Populus trichocarpa
Potri.007G009800 Populus trichocarpa
Potri.009G137200 Populus trichocarpa
Pp3c11_26720 Physcomitrium patens
Pp3c22_21050 Physcomitrium patens
Pp3c22_21070 Physcomitrium patens
Pp3c7_5120 Physcomitrium patens
Pp3c7_5140 Physcomitrium patens
PRCOL_00005318 Prasinoderma coloniale
Prupe.6G161000 Prunus persica
Prupe.8G167600 Prunus persica
Prupe.8G167800 Prunus persica
Prupe.8G227100 Prunus persica
Psat0s3092g0160 Pisum sativum
Psat5g064320 Pisum sativum
Psat6g232280 Pisum sativum
Psat7g049480 Pisum sativum
PSO541G2584 Papaver somniferum
PSO541G3518 Papaver somniferum
PSO675G0525 Papaver somniferum
PSO675G4204 Papaver somniferum
PSO675G5918 Papaver somniferum
PSO832G0979 Papaver somniferum
QL04p087897 Quercus lobata
QL05p031699 Quercus lobata
QL06p031249 Quercus lobata
QL11p050659 Quercus lobata
QL11p051318 Quercus lobata
QL11p051397 Quercus lobata
QL11p051403 Quercus lobata
RcHm_v2.0_Chr2g0119921 Rosa chinensis
RcHm_v2.0_Chr6g0278641 Rosa chinensis
RcHm_v2.0_Chr6g0278711 Rosa chinensis
Rhsim02G0185300 Rhododendron simsii
Rhsim03G0117900 Rhododendron simsii
Rhsim08G0004300 Rhododendron simsii
Rhsim10G0144500 Rhododendron simsii
Rhsim11G0193000 Rhododendron simsii
Rhsim11G0193100 Rhododendron simsii
Sabra04G0118900 Salix brachista
Sabra05G0117500 Salix brachista
Sabra05G0117600 Salix brachista
Sabra07G0007500 Salix brachista
Sabra09G0106600 Salix brachista
SalBow5G2670 Salvia bowleyana
Sc02g0005810 Simmondsia chinensis
Sc07g0001620 Simmondsia chinensis
Sc08g0002790 Simmondsia chinensis
Sed0000816 Sechium edule
Sed0017736 Sechium edule
Sed0025364 Sechium edule
SEGI_26987 Sequoiadendron giganteum
SGA_v2.0_scaffold47G17684 Striga asiatica
SGA_v2.0_scaffold58G20356 Striga asiatica
SHI05768 Sapria himalayana
SHI11508 Sapria himalayana
SMO172G0032 Selaginella moellendorffii
Solyc11g005170.2 Solanum lycopersicum
Sopen11g001170 Solanum pennellii
Sp3g30210 Schrenkiella parvula
Sp6g33520 Schrenkiella parvula
TAR381G0897 Trochodendron aralioides
TAR381G0974 Trochodendron aralioides
TAR381G1411 Trochodendron aralioides
TAR625G0001 Trochodendron aralioides
TAR625G0828 Trochodendron aralioides
THA.LOC104807378 Tarenaya hassleriana
THA.LOC104818470 Tarenaya hassleriana
THA.LOC104819657 Tarenaya hassleriana
Thecc.01G118000 Theobroma cacao
Thecc.02G057400 Theobroma cacao
Thhalv10013005m.g Eutrema salsugineum
Thhalv10022624m.g Eutrema salsugineum
TPR.G18714 Trifolium pratense
TPR.G22170 Trifolium pratense
TPR.G2224 Trifolium pratense
TWI31G0624 Tripterygium wilfordii
TWI75G0470 Tripterygium wilfordii
TWI75G1869 Tripterygium wilfordii
TWI79G0901 Tripterygium wilfordii
unitig_88.g27744 Utricularia gibba
vmacro02285 Vaccinium macrocarpon
vmacro12873 Vaccinium macrocarpon
vmacro13108 Vaccinium macrocarpon
vmacro18650 Vaccinium macrocarpon
VMungo0251G1872 Vigna mungo
VMungo0720G0946 Vigna mungo
VMungo1215G1433 Vigna mungo
VMungo1309G0471 Vigna mungo
VMungo1309G1833 Vigna mungo
Zm00001eb047310 Zea mays
Zm00001eb222690 Zea mays
Zm00001eb390760 Zea mays
Zm00001eb403170 Zea mays

User provided reference genes

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