Gene: AT2G16940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G16940
  • Transcript Identifier AT2G16940.1
  • Gene Type Coding gene
  • Location Chr2 : 7342869-7347052 : negative

Gene Family Information

  • ID HOM05D002097
  • #Genes/#Species 318/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G16940.1
  • uniprot Q9ZVW9

Descriptions

  • Description Splicing factor, CC1-like protein
  • Computational description Splicing factor, CC1-like; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Splicing factor, CC1-like (TAIR:AT5G09880.1); Has 101521 Blast hits to 50249 proteins in 1917 species: Archae - 88; Bacteria - 8818; Metazoa - 50214; Fungi - 11566; Plants - 10292; Viruses - 445; Other Eukaryotes - 20098 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
Gene OntologymRNA processing
GO:0006397
IEA
InterPromRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
IEA
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR029123 Splicing factor RBM39, linker
IPR000504 RNA recognition motif domain
IPR003954 RNA recognition motif domain, eukaryote
IPR006509 Splicing factor, RBM39-like
Mapman id Description
35.1 not assigned.annotated