Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p11330 Brassica napus
A04p21640 Brassica napus
A06p21320 Brassica napus
A08p10770 Brassica napus
Aa31LG1G12340 Aethionema arabicum
Aa31LG4G14820 Aethionema arabicum
Actinidia00815 Actinidia chinensis
Actinidia03020 Actinidia chinensis
Actinidia03757 Actinidia chinensis
Actinidia07100 Actinidia chinensis
Actinidia27202 Actinidia chinensis
Actinidia37283 Actinidia chinensis
Actinidia37284 Actinidia chinensis
Actinidia38242 Actinidia chinensis
Ah.01g014730 Amaranthus hybridus
AL4G23040 Arabidopsis lyrata
AL5G24250 Arabidopsis lyrata
AL8G10110 Arabidopsis lyrata
AL8G36780 Arabidopsis lyrata
Aqoxy4G03171 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.04G3W2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BB6RTX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L7TZBM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XKSF6X Arachis hypogaea
AT2G28540 Arabidopsis thaliana
AT3G45630 Arabidopsis thaliana
AT5G60170 Arabidopsis thaliana
ATR0594G039 Amborella trichopoda
Atru.chr3.3737 Acer truncatum
Atru.chr8.2548 Acer truncatum
AUR62006483 Chenopodium quinoa
AUR62006487 Chenopodium quinoa
AUR62006488 Chenopodium quinoa
AUR62025044 Chenopodium quinoa
AUR62025045 Chenopodium quinoa
BcaB01g01080 Brassica carinata
BcaB01g06358 Brassica carinata
BcaB02g10169 Brassica carinata
BcaB05g22626 Brassica carinata
BcaB06g28227 Brassica carinata
BcaC01g01962 Brassica carinata
BcaC02g08160 Brassica carinata
BcaC02g10972 Brassica carinata
BcaC04g19661 Brassica carinata
BolC3t13769H Brassica oleracea
BolC3t13771H Brassica oleracea
BolC3t19266H Brassica oleracea
BolC4t23775H Brassica oleracea
BolC4t27294H Brassica oleracea
BolC9t58132H Brassica oleracea
BraA03t10447Z Brassica rapa
BraA04t17728Z Brassica rapa
BraA06t25220Z Brassica rapa
BraA07t29615Z Brassica rapa
BraA08t33074Z Brassica rapa
C03p13060 Brassica napus
C03p13080 Brassica napus
C03p70080 Brassica napus
C04p22770 Brassica napus
C04p57760 Brassica napus
C09p52650 Brassica napus
CAN.G186.27 Capsicum annuum
CAN.G200.3 Capsicum annuum
CAN.G84.35 Capsicum annuum
CANSAT54G1232 Cannabis sativa
CARHR117410 Cardamine hirsuta
CARHR118690 Cardamine hirsuta
CARHR118710 Cardamine hirsuta
CARHR121550 Cardamine hirsuta
CARHR154080 Cardamine hirsuta
CARHR273820 Cardamine hirsuta
CARHR273830 Cardamine hirsuta
CARHR273850 Cardamine hirsuta
Carub.0004s0951 Capsella rubella
Carub.0005s1148 Capsella rubella
Carub.0008s2090 Capsella rubella
Ca_01445_v3 Cicer arietinum L.
Ca_03792_v3 Cicer arietinum L.
Ca_11444_v3 Cicer arietinum L.
Ca_19232_v3 Cicer arietinum L.
CBR_g35012 Chara braunii
CBR_g4447 Chara braunii
Cc01_g11820 Coffea canephora
Cc09_g02530 Coffea canephora
CDE02G2622 Ceratophyllum demersum
CDE04G0776 Ceratophyllum demersum
CDE07G0589 Ceratophyllum demersum
CDE09G0545 Ceratophyllum demersum
CDE09G0797 Ceratophyllum demersum
Cfa017499 Carpinus fangiana
Cfa025430 Carpinus fangiana
Ciclev10010976m.g Citrus clementina
Ciclev10027731m.g Citrus clementina
CiPaw.13G104800 Carya illinoinensis
CiPaw.13G104900 Carya illinoinensis
ClCG02G020770 Citrullus lanatus
COL.COLO4_18383 Corchorus olitorius
COL.COLO4_27092 Corchorus olitorius
Cpa.g.sc139.44 Carica papaya
CsaV3_6G021850 Cucumis sativus L.
CSS0002677 Camellia sinensis var. sinensis
CSS0003168 Camellia sinensis var. sinensis
CSS0003965 Camellia sinensis var. sinensis
CSS0008118 Camellia sinensis var. sinensis
CSS0019048 Camellia sinensis var. sinensis
CSS0023988 Camellia sinensis var. sinensis
CSS0044409 Camellia sinensis var. sinensis
DCAR_005287 Daucus carota
DCAR_006476 Daucus carota
DCAR_015568 Daucus carota
DCAR_018847 Daucus carota
DCAR_018851 Daucus carota
DCAR_019143 Daucus carota
DCAR_029920 Daucus carota
DCAR_030669 Daucus carota
Dinv06354 Davidia involucrata
Dinv11816 Davidia involucrata
Dinv31369 Davidia involucrata
Dinv32813 Davidia involucrata
Dinv32814 Davidia involucrata
Dinv35704 Davidia involucrata
Dinv37244 Davidia involucrata
Dinv37245 Davidia involucrata
Duzib106G0517 Durio zibethinus
Duzib106G1204 Durio zibethinus
Duzib150G1164 Durio zibethinus
Duzib168G1585 Durio zibethinus
Duzib170G1143 Durio zibethinus
ECA233G0924 Erigeron canadensis
ECA238G1845 Erigeron canadensis
ECA247G3976 Erigeron canadensis
EL10Ac9g22397 Beta vulgaris
Eucgr.B02454 Eucalyptus grandis
Eucgr.J02120 Eucalyptus grandis
FAN02G2428 Fragaria x ananassa
FAN05G0878 Fragaria x ananassa
FAN09G4680 Fragaria x ananassa
FAN11G3580 Fragaria x ananassa
FAN14G1357 Fragaria x ananassa
FAN16G2581 Fragaria x ananassa
FAN21G0873 Fragaria x ananassa
FAN25G2198 Fragaria x ananassa
FvH4_3g33920 Fragaria vesca
FvH4_6g15190 Fragaria vesca
Glyma.10G048700 Glycine max
Glyma.11G150034 Glycine max
Glyma.12G073200 Glycine max
Glyma.13G136500 Glycine max
Glyma.13G329600 Glycine max
Glyma.15G044500 Glycine max
Glyma.19G074150 Glycine max
Gohir.A05G100500 Gossypium hirsutum
Gohir.A07G093300 Gossypium hirsutum
Gohir.A08G000088 Gossypium hirsutum
Gohir.A13G229800 Gossypium hirsutum
Gohir.D05G100300 Gossypium hirsutum
Gohir.D07G097900 Gossypium hirsutum
Gohir.D08G008800 Gossypium hirsutum
Gohir.D13G235300 Gossypium hirsutum
Gorai.001G105300 Gossypium raimondii
Gorai.004G002000 Gossypium raimondii
Gorai.009G104400 Gossypium raimondii
Gorai.013G266000 Gossypium raimondii
GSVIVG01025102001 Vitis vinifera
GSVIVG01025550001 Vitis vinifera
HanXRQChr01g0001971 Helianthus annuus
HanXRQChr01g0020011 Helianthus annuus
HanXRQChr05g0150831 Helianthus annuus
HanXRQChr05g0150841 Helianthus annuus
HanXRQChr05g0150851 Helianthus annuus
HanXRQChr07g0200891 Helianthus annuus
HanXRQChr08g0219771 Helianthus annuus
HanXRQChr08g0229981 Helianthus annuus
HanXRQChr08g0232531 Helianthus annuus
HanXRQChr11g0323811 Helianthus annuus
HanXRQChr14g0460901 Helianthus annuus
Haze_20663 Corylus avellana
Haze_23952 Corylus avellana
Hma1.2p1_0786F.1_g217610 Hydrangea macrophylla
Hma1.2p1_1731F.1_g299750 Hydrangea macrophylla
Hma1.2p1_2135F.1_g314880 Hydrangea macrophylla
Hma1.2p1_2258F.1_g318300 Hydrangea macrophylla
Hma1.2p1_2898F.1_g330000 Hydrangea macrophylla
HPP92_017940 Vanilla planifolia
HPP92_023177 Vanilla planifolia
Lalb_Chr01g0004061 Lupinus albus
Lalb_Chr01g0019041 Lupinus albus
Lalb_Chr03g0027031 Lupinus albus
Lalb_Chr06g0171321 Lupinus albus
Lalb_Chr14g0374841 Lupinus albus
Lalb_Chr19g0137531 Lupinus albus
Lj1A925G63 Lonicera japonica
Lj1A925T66 Lonicera japonica
Lj1C181T4 Lonicera japonica
Lj2C1042G4 Lonicera japonica
Lj3g0005960 Lotus japonicus
Lj3g0016662 Lotus japonicus
Lj5g0026183 Lotus japonicus
Lsat_1_v5_gn_2_116181 Lactuca sativa
Lsat_1_v5_gn_5_164641 Lactuca sativa
Lsat_1_v5_gn_6_14400 Lactuca sativa
Lsat_1_v5_gn_8_18061 Lactuca sativa
Lsat_1_v5_gn_9_20441 Lactuca sativa
Manes.04G026900 Manihot esculenta
Manes.09G080400 Manihot esculenta
Manes.11G139600 Manihot esculenta
MBI10_g30423_MAGBIO Magnolia biondii
MCO02G387 Micromonas commoda
MD03G1108000 Malus domestica
MD04G1105000 Malus domestica
MD11G1121300 Malus domestica
MD12G1125800 Malus domestica
MD13G1099600 Malus domestica
Medtr1g066970 Medicago truncatula
Medtr2g093100 Medicago truncatula
Medtr3g064785 Medicago truncatula
Medtr4g061180 Medicago truncatula
MELO3C025725.2 Cucumis melo
Migut.D02169 Erythranthe guttata
Migut.F02020 Erythranthe guttata
Migut.N02636 Erythranthe guttata
MSTRG.17855 Avicennia marina
MSTRG.27448 Avicennia marina
Nitab4.5_0000022g0320 Nicotiana tabacum
Nitab4.5_0000061g0400 Nicotiana tabacum
Nitab4.5_0000372g0030 Nicotiana tabacum
Nitab4.5_0000533g0030 Nicotiana tabacum
Nitab4.5_0000691g0230 Nicotiana tabacum
Nitab4.5_0000888g0050 Nicotiana tabacum
Nitab4.5_0003258g0010 Nicotiana tabacum
Nitab4.5_0003582g0050 Nicotiana tabacum
Nitab4.5_0004104g0110 Nicotiana tabacum
Nn2g10631 Nelumbo nucifera
Nn2g12973 Nelumbo nucifera
Oeu017237.1 Olea europaea
Oeu047709.3 Olea europaea
Oeu058500.1 Olea europaea
Oeu058503.1 Olea europaea
Oeu062274.1 Olea europaea
Os01g0209500 Oryza sativa ssp. japonica
Os11g0102800 Oryza sativa ssp. japonica
Os12g0102400 Oryza sativa ssp. japonica
Peaxi162Scf00195g00833 Petunia axillaris
Peaxi162Scf00208g00068 Petunia axillaris
Peaxi162Scf00389g00212 Petunia axillaris
PGR102G3367 Punica granatum
PGR119G2367 Punica granatum
PGSC0003DMG400003412 Solanum tuberosum
PGSC0003DMG400030059 Solanum tuberosum
PGSC0003DMG400032553 Solanum tuberosum
PGSC0003DMG401017810 Solanum tuberosum
PGSC0003DMG402017810 Solanum tuberosum
Phvul.011G071200 Phaseolus vulgaris
Phvul.L000154 Phaseolus vulgaris
Potri.006G132300 Populus trichocarpa
Potri.009G026200 Populus trichocarpa
Potri.016G084700 Populus trichocarpa
PRCOL_00003222 Prasinoderma coloniale
Prupe.6G091300 Prunus persica
Prupe.6G242300 Prunus persica
Psat3g164840 Pisum sativum
Psat3g194320 Pisum sativum
Psat5g276760 Pisum sativum
Psat6g067120 Pisum sativum
Psat7g221920 Pisum sativum
PSO017G3727 Papaver somniferum
PSO339G1092 Papaver somniferum
PSO384G1408 Papaver somniferum
PSO384G2068 Papaver somniferum
QL01p035905 Quercus lobata
QL07p045416 Quercus lobata
RcHm_v2.0_Chr3g0468541 Rosa chinensis
RcHm_v2.0_Chr5g0061481 Rosa chinensis
Rhsim01G0221800 Rhododendron simsii
Rhsim03G0121900 Rhododendron simsii
Rhsim13G0090500 Rhododendron simsii
RhsimUnG0138900 Rhododendron simsii
Sabra09G0017400 Salix brachista
Sabra16G0091500 Salix brachista
SalBow3G0541 Salvia bowleyana
SalBow3G2001 Salvia bowleyana
SalBow4G1260 Salvia bowleyana
Sc15g0007260 Simmondsia chinensis
Sc21g0000150 Simmondsia chinensis
Sed0023055 Sechium edule
Sed0025423 Sechium edule
SEGI_03208 Sequoiadendron giganteum
SGA_v2.0_scaffold316G48406 Striga asiatica
SGA_v2.0_scaffold329G48841 Striga asiatica
SGA_v2.0_scaffold61G21188 Striga asiatica
SHI06012 Sapria himalayana
SHI31429 Sapria himalayana
SMO364G0192 Selaginella moellendorffii
Solyc04g009510.4 Solanum lycopersicum
Solyc04g049840.4 Solanum lycopersicum
Solyc06g005190.4 Solanum lycopersicum
Solyc11g072590.3 Solanum lycopersicum
Sopen04g004670 Solanum pennellii
Sopen04g020110 Solanum pennellii
Sopen06g001180 Solanum pennellii
Sopen11g030240 Solanum pennellii
Sp4g11360 Schrenkiella parvula
Sp4g11370 Schrenkiella parvula
Sp5g15830 Schrenkiella parvula
Sp5g15860 Schrenkiella parvula
TAR369G0440 Trochodendron aralioides
TAR623G0850 Trochodendron aralioides
TAR623G1444 Trochodendron aralioides
TAR633G1817 Trochodendron aralioides
TAR636G0263 Trochodendron aralioides
TAR636G3427 Trochodendron aralioides
THA.LOC104799481 Tarenaya hassleriana
THA.LOC104810834 Tarenaya hassleriana
THA.LOC104826353 Tarenaya hassleriana
Thecc.05G053100 Theobroma cacao
Thecc.09G336200 Theobroma cacao
Thhalv10012563m.g Eutrema salsugineum
Thhalv10012567m.g Eutrema salsugineum
Thhalv10016186m.g Eutrema salsugineum
TPR.G10480 Trifolium pratense
TPR.G11610 Trifolium pratense
TPR.G2975 Trifolium pratense
TPR.G35657 Trifolium pratense
TWI75G0843 Tripterygium wilfordii
TWI79G1131 Tripterygium wilfordii
unitig_0.g1524 Utricularia gibba
unitig_747.g22011 Utricularia gibba
unitig_747.g22012 Utricularia gibba
vmacro03146 Vaccinium macrocarpon
vmacro07095 Vaccinium macrocarpon
vmacro14484 Vaccinium macrocarpon
VMungo1080G1499 Vigna mungo
VMungo1127G1737 Vigna mungo
Zm00001eb094340 Zea mays
Zm00001eb120310 Zea mays
Zm00001eb163140 Zea mays
Zm00001eb194940 Zea mays
Zm00001eb417060 Zea mays

User provided reference genes

Program Settings