Gene: Carub.0008s2090
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0008s2090
- Transcript Identifier Carub.0008s2090.1
- Gene Type Coding gene
- Location scaffold_8 : 10469446-10473946 : positive
Gene Family Information
- ID HOM05D001959
- #Genes/#Species 338/95
- Phylogenetic origin
- ID ORTHO05D001955
- #Genes/#Species 333/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id Carub.0008s2090.v1.1
- pacid 39251205
- synonym Carubv10025773m.g
Descriptions
- Description K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032544 | ISO | PLAZA Integrative Orthology | plastid translation | AT5G60170 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004842 | IEA | InterPro | ubiquitin-protein transferase activity | |
| GO:0003676 | IEA | InterPro | nucleic acid binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030014 | IEA | InterPro | CCR4-NOT complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR039780 | CCR4-NOT transcription complex subunit 4 |
| IPR039515 | NOT4, modified RING finger, HC subclass (C4C4-type) |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR000504 | RNA recognition motif domain |
| IPR034261 | CNOT4, RNA recognition motif |
| IPR035979 | RNA-binding domain superfamily |
| IPR003954 | RNA recognition motif domain, eukaryote |
| Mapman id | Description |
|---|---|
| 16.4.2.1.2.6 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.component NOT4 |
| 19.4.3.1 | Protein homeostasis.proteolysis.aspartic-type peptidase activities.A1-class protease (Pepsin) |