Gene: AT5G60170

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G60170
  • Transcript Identifier AT5G60170.2
  • Gene Type Coding gene
  • Location Chr5 : 24228178-24232394 : positive

Gene Family Information

  • ID HOM05D001959
  • #Genes/#Species 338/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G60170.2
  • uniprot F4JXH7

Descriptions

  • Description RNA binding (RRM/RBD/RNP motifs) family protein
  • Computational description RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1); Has 1342 Blast hits to 828 proteins in 247 species: Archae - 0; Bacteria - 318; Metazoa - 242; Fungi - 228; Plants - 152; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).
  • Computational description RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032544
IGI
Gene Ontologyplastid translation1
GO:0016567
IBA
Gene Ontologyprotein ubiquitination2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IBA
IEA
Gene Ontologyubiquitin-protein transferase activity2
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0030014
IBA
IEA
Gene OntologyCCR4-NOT complex2
GO:0030014
IEA
InterProCCR4-NOT complex
GO:0009536
IEA
GOA Databaseplastid

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003954 RNA recognition motif domain, eukaryote
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR034261 CNOT4, RNA recognition motif
IPR000504 RNA recognition motif domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR039780 CCR4-NOT transcription complex subunit 4
IPR035979 RNA-binding domain superfamily
IPR039515 NOT4, modified RING finger, HC subclass (C4C4-type)
Mapman id Description
16.4.2.1.2.6 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.component NOT4