Gene: ATR0594G039
General Information
Structural Information
- Species Amborella trichopoda
- Gene Identifier ATR0594G039
- Transcript Identifier ATR0594G039.1
- Gene Type Coding gene
- Location AmTr_v1.0_scaffold00023 : 5949539-5971994 : positive
Gene Family Information
- ID HOM05D001959
- #Genes/#Species 338/95
- Phylogenetic origin
- ID ORTHO05D001955
- #Genes/#Species 333/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id evm_27.TU.AmTr_v1.0_scaffold00023.219.v1.0
- pacid 31573763
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032544 | ISO | PLAZA Integrative Orthology | plastid translation | AT5G60170 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0004842 | IEA | InterPro | ubiquitin-protein transferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030014 | IEA | InterPro | CCR4-NOT complex | |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G45630 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000504 | RNA recognition motif domain |
| IPR035979 | RNA-binding domain superfamily |
| IPR039515 | NOT4, modified RING finger, HC subclass (C4C4-type) |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR003954 | RNA recognition motif domain, eukaryote |
| IPR039780 | CCR4-NOT transcription complex subunit 4 |
| IPR034261 | CNOT4, RNA recognition motif |
| Mapman id | Description |
|---|---|
| 16.4.2.1.2.6 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.component NOT4 |