Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p17870 Brassica napus
A02p09580 Brassica napus
A02p42870 Brassica napus
A06p27830 Brassica napus
A06p30170 Brassica napus
A09p08340 Brassica napus
A10p12970 Brassica napus
Aa31LG1G18390 Aethionema arabicum
Aa31LG3G11600 Aethionema arabicum
Aa31LG4G17260 Aethionema arabicum
Aa31LG5G12000 Aethionema arabicum
Actinidia05012 Actinidia chinensis
Actinidia25554 Actinidia chinensis
Actinidia30410 Actinidia chinensis
Actinidia35400 Actinidia chinensis
Actinidia37156 Actinidia chinensis
Ah.02g114780 Amaranthus hybridus
Ah.06g181390 Amaranthus hybridus
Ah.11g046370 Amaranthus hybridus
AL5G28130 Arabidopsis lyrata
AL7G26260 Arabidopsis lyrata
AL8G31240 Arabidopsis lyrata
AL8G40630 Arabidopsis lyrata
Aqoxy1G04255 Aquilegia oxysepala
Aqoxy3G01661 Aquilegia oxysepala
Aqoxy4G02337 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.706G3K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A0BSJM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A9Q4ZU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MQM99M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N9UI7L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UA4Z3X Arachis hypogaea
AT3G48710 Arabidopsis thaliana
AT4G26630 Arabidopsis thaliana
AT5G55660 Arabidopsis thaliana
AT5G63550 Arabidopsis thaliana
ATR0827G138 Amborella trichopoda
Atru.chr2.3683 Acer truncatum
Atru.chr6.1858 Acer truncatum
AUR62017093 Chenopodium quinoa
AUR62036408 Chenopodium quinoa
AUR62036448 Chenopodium quinoa
BcaB02g09752 Brassica carinata
BcaB02g10625 Brassica carinata
BcaB03g12501 Brassica carinata
BcaB04g19925 Brassica carinata
BcaB07g29694 Brassica carinata
BcaB07g29996 Brassica carinata
BcaB08g35929 Brassica carinata
BcaC01g02357 Brassica carinata
BcaC01g02609 Brassica carinata
BcaC03g18213 Brassica carinata
BcaC04g20208 Brassica carinata
BcaC04g23338 Brassica carinata
BcaC07g39351 Brassica carinata
BcaNung02397 Brassica carinata
BolC1t02198H Brassica oleracea
BolC2t07698H Brassica oleracea
BolC2t12353H Brassica oleracea
BolC3t18544H Brassica oleracea
BolC3t18889H Brassica oleracea
BolC8t50000H Brassica oleracea
BolC9t53853H Brassica oleracea
BolC9t57518H Brassica oleracea
BraA01t01743Z Brassica rapa
BraA02t06022Z Brassica rapa
BraA06t25723Z Brassica rapa
BraA06t25968Z Brassica rapa
BraA09t36483Z Brassica rapa
BraA10t43391Z Brassica rapa
C01p22680 Brassica napus
C02p15930 Brassica napus
C02p62810 Brassica napus
C03p62900 Brassica napus
C03p66170 Brassica napus
C08p23700 Brassica napus
C09p09410 Brassica napus
C09p46670 Brassica napus
CAN.G337.4 Capsicum annuum
CAN.G492.36 Capsicum annuum
CAN.G65.117 Capsicum annuum
CAN.G732.10 Capsicum annuum
CANSAT11G1471 Cannabis sativa
CANSAT80G2115 Cannabis sativa
CARHR157460 Cardamine hirsuta
CARHR234220 Cardamine hirsuta
CARHR268980 Cardamine hirsuta
CARHR277410 Cardamine hirsuta
Carub.0005s1485 Capsella rubella
Carub.0007s1424 Capsella rubella
Carub.0008s1603 Capsella rubella
Carub.0008s2428 Capsella rubella
Ca_06393_v3 Cicer arietinum L.
Ca_16062_v3 Cicer arietinum L.
Ca_16065_v3 Cicer arietinum L.
Ca_22135_v3 Cicer arietinum L.
Ca_30468_v3 Cicer arietinum L.
CBR_g5759 Chara braunii
Cc04_g09600 Coffea canephora
Cc05_g14890 Coffea canephora
CDE02G1752 Ceratophyllum demersum
CDE02G2918 Ceratophyllum demersum
CDE05G1381 Ceratophyllum demersum
CDE05G1523 Ceratophyllum demersum
Cfa018762 Carpinus fangiana
Cfa020198 Carpinus fangiana
Ciclev10007691m.g Citrus clementina
Ciclev10031009m.g Citrus clementina
CiPaw.11G203300 Carya illinoinensis
CiPaw.12G004400 Carya illinoinensis
CiPaw.12G137800 Carya illinoinensis
ClCG06G018090 Citrullus lanatus
ClCG10G004270 Citrullus lanatus
COL.COLO4_09822 Corchorus olitorius
COL.COLO4_16650 Corchorus olitorius
COL.COLO4_16651 Corchorus olitorius
Cpa.g.sc12.152 Carica papaya
Cpa.g.sc989.2 Carica papaya
Cre12.g513150 Chlamydomonas reinhardtii
CsaV3_1G000380 Cucumis sativus L.
CsaV3_3G004070 Cucumis sativus L.
CSS0002645 Camellia sinensis var. sinensis
CSS0006292 Camellia sinensis var. sinensis
CSS0012299 Camellia sinensis var. sinensis
CSS0019403 Camellia sinensis var. sinensis
DCAR_013228 Daucus carota
DCAR_016373 Daucus carota
DCAR_017085 Daucus carota
DCAR_021642 Daucus carota
DCAR_026235 Daucus carota
Dinv10327 Davidia involucrata
Dinv11196 Davidia involucrata
Dinv23178 Davidia involucrata
Dinv40852 Davidia involucrata
Dinv40853 Davidia involucrata
Duzib068G0449 Durio zibethinus
Duzib084G0782 Durio zibethinus
Duzib170G0335 Durio zibethinus
Duzib205G0120 Durio zibethinus
Duzib213G0017 Durio zibethinus
Duzib268G1664 Durio zibethinus
ECA232G3722 Erigeron canadensis
ECA240G1088 Erigeron canadensis
ECA246G3856 Erigeron canadensis
ECA246G4200 Erigeron canadensis
EL10Ac1g01733 Beta vulgaris
EL10Ac4g07585 Beta vulgaris
EL10Ac5g11375 Beta vulgaris
Eucgr.F02052 Eucalyptus grandis
Eucgr.K02701 Eucalyptus grandis
FAN04G1505 Fragaria x ananassa
FAN08G0856 Fragaria x ananassa
FAN11G4026 Fragaria x ananassa
FAN13G1532 Fragaria x ananassa
FAN16G3081 Fragaria x ananassa
FAN18G3101 Fragaria x ananassa
FAN21G0111 Fragaria x ananassa
FAN25G3697 Fragaria x ananassa
FvH4_3g29362 Fragaria vesca
FvH4_5g08751 Fragaria vesca
Glyma.04G197900 Glycine max
Glyma.05G203100 Glycine max
Glyma.06G167700 Glycine max
Glyma.08G010600 Glycine max
Glyma.08G329100 Glycine max
Glyma.08G329200 Glycine max
Glyma.18G077600 Glycine max
Glyma.18G077700 Glycine max
Gohir.A04G006100 Gossypium hirsutum
Gohir.A07G048900 Gossypium hirsutum
Gohir.A08G128550 Gossypium hirsutum
Gohir.A12G093425 Gossypium hirsutum
Gohir.A12G191300 Gossypium hirsutum
Gohir.D01G076440 Gossypium hirsutum
Gohir.D05G383400 Gossypium hirsutum
Gohir.D07G053100 Gossypium hirsutum
Gohir.D12G193400 Gossypium hirsutum
Gorai.001G056200 Gossypium raimondii
Gorai.002G099700 Gossypium raimondii
Gorai.008G208200 Gossypium raimondii
Gorai.009G450100 Gossypium raimondii
GSVIVG01008586001 Vitis vinifera
GSVIVG01014672001 Vitis vinifera
HanXRQChr03g0074051 Helianthus annuus
HanXRQChr05g0159891 Helianthus annuus
HanXRQChr10g0279181 Helianthus annuus
HanXRQChr13g0408161 Helianthus annuus
HanXRQChr16g0498321 Helianthus annuus
Haze_07179 Corylus avellana
Haze_09817 Corylus avellana
Hma1.2p1_0093F.1_g046920 Hydrangea macrophylla
Hma1.2p1_1559F.1_g290640 Hydrangea macrophylla
Hma1.2p1_1559F.1_g290650 Hydrangea macrophylla
HPP92_000339 Vanilla planifolia
HPP92_003191 Vanilla planifolia
HPP92_006994 Vanilla planifolia
HPP92_014024 Vanilla planifolia
HPP92_014029 Vanilla planifolia
HPP92_028356 Vanilla planifolia
HPP92_028357 Vanilla planifolia
HPP92_028359 Vanilla planifolia
HPP92_028360 Vanilla planifolia
Hund02460 Selenicereus undatus
Lalb_Chr04g0247871 Lupinus albus
Lalb_Chr10g0107401 Lupinus albus
Lalb_Chr11g0069391 Lupinus albus
Lalb_Chr12g0202321 Lupinus albus
Lalb_Chr15g0082041 Lupinus albus
Lalb_Chr17g0348941 Lupinus albus
Lj1C889G5 Lonicera japonica
Lj1g0012650 Lotus japonicus
Lj8C178T12 Lonicera japonica
Lj9P481T38 Lonicera japonica
LjContig00081g0007565 Lotus japonicus
Lsat_1_v5_gn_2_13000 Lactuca sativa
Lsat_1_v5_gn_5_1401 Lactuca sativa
Lsat_1_v5_gn_9_90080 Lactuca sativa
Manes.03G140900 Manihot esculenta
Manes.06G122400 Manihot esculenta
Manes.14G048600 Manihot esculenta
Manes.15G060500 Manihot esculenta
Mapoly0067s0068 Marchantia polymorpha
MBI11_g13055_MAGBIO Magnolia biondii
MBI16_g22139_MAGBIO Magnolia biondii
MBI16_g47138_MAGBIO Magnolia biondii
MBI19_g14894_MAGBIO Magnolia biondii
MCO14G283 Micromonas commoda
MD03G1183500 Malus domestica
MD06G1137600 Malus domestica
MD11G1200600 Malus domestica
MD14G1152400 Malus domestica
Medtr3g058970 Medicago truncatula
Medtr3g098990 Medicago truncatula
Medtr5g095720 Medicago truncatula
Medtr5g096450 Medicago truncatula
MELO3C014102.2 Cucumis melo
MELO3C026189.2 Cucumis melo
Migut.D01279 Erythranthe guttata
Migut.H01758 Erythranthe guttata
MSTRG.13020 Avicennia marina
MSTRG.14484 Avicennia marina
MSTRG.4611 Avicennia marina
MSTRG.9335 Avicennia marina
Nitab4.5_0000461g0250 Nicotiana tabacum
Nitab4.5_0000645g0010 Nicotiana tabacum
Nitab4.5_0001257g0040 Nicotiana tabacum
Nitab4.5_0001332g0020 Nicotiana tabacum
Nitab4.5_0003491g0070 Nicotiana tabacum
Nitab4.5_0004670g0030 Nicotiana tabacum
Nitab4.5_0005906g0020 Nicotiana tabacum
Nitab4.5_0006508g0020 Nicotiana tabacum
Nn1g03185 Nelumbo nucifera
Nn3g16374 Nelumbo nucifera
Oeu005486.1 Olea europaea
Oeu005962.1 Olea europaea
Oeu014355.1 Olea europaea
Oeu014356.1 Olea europaea
Oeu030661.1 Olea europaea
Oeu041438.3 Olea europaea
Oeu049399.1 Olea europaea
Oeu057102.1 Olea europaea
Oeu061130.1 Olea europaea
Os01g0924900 Oryza sativa ssp. japonica
Os03g0412900 Oryza sativa ssp. japonica
Os03g0596900 Oryza sativa ssp. japonica
Peaxi162Scf00516g00221 Petunia axillaris
Peaxi162Scf01064g00233 Petunia axillaris
Peaxi162Scf01164g00129 Petunia axillaris
PGR083G0672 Punica granatum
PGR083G1897 Punica granatum
PGSC0003DMG400022282 Solanum tuberosum
PGSC0003DMG400031730 Solanum tuberosum
PGSC0003DMG401014410 Solanum tuberosum
PGSC0003DMG401026940 Solanum tuberosum
Phvul.002G284800 Phaseolus vulgaris
Phvul.006G056800 Phaseolus vulgaris
Phvul.006G056900 Phaseolus vulgaris
Phvul.009G162200 Phaseolus vulgaris
Potri.001G367400 Populus trichocarpa
Potri.011G093200 Populus trichocarpa
Potri.012G102500 Populus trichocarpa
Potri.015G100700 Populus trichocarpa
Pp3c14_4960 Physcomitrium patens
PRCOL_00002049 Prasinoderma coloniale
Prupe.4G242500 Prunus persica
Prupe.4G242600 Prunus persica
Prupe.5G147400 Prunus persica
Psat2g007560 Pisum sativum
Psat5g052560 Pisum sativum
Psat5g168800 Pisum sativum
Psat5g269800 Pisum sativum
Psat7g196920 Pisum sativum
PSO017G0112 Papaver somniferum
PSO478G2105 Papaver somniferum
PSO500G0312 Papaver somniferum
PSO541G1067 Papaver somniferum
PSO675G5971 Papaver somniferum
PSO675G8484 Papaver somniferum
QL08p004228 Quercus lobata
QL10p002064 Quercus lobata
QL10p002094 Quercus lobata
RcHm_v2.0_Chr5g0053741 Rosa chinensis
RcHm_v2.0_Chr5g0053751 Rosa chinensis
RcHm_v2.0_Chr7g0189521 Rosa chinensis
Rhsim04G0012700 Rhododendron simsii
Rhsim04G0012800 Rhododendron simsii
Rhsim06G0229000 Rhododendron simsii
Sabra12G0075100 Salix brachista
Sabra15G0121100 Salix brachista
Sabra16G0240600 Salix brachista
SalBow1G5336 Salvia bowleyana
SalBow1G7252 Salvia bowleyana
SalBow5G1728 Salvia bowleyana
Sc16g0008030 Simmondsia chinensis
Sc22g0003660 Simmondsia chinensis
Sed0005357 Sechium edule
Sed0006520 Sechium edule
SEGI_09311 Sequoiadendron giganteum
SEGI_16224 Sequoiadendron giganteum
SEGI_34902 Sequoiadendron giganteum
SGA_v2.0_scaffold168G38556 Striga asiatica
SGA_v2.0_scaffold171G38878 Striga asiatica
SGA_v2.0_scaffold262G45936 Striga asiatica
SGA_v2.0_scaffold37G14636 Striga asiatica
SGA_v2.0_scaffold42G15990 Striga asiatica
SHI26537 Sapria himalayana
SHI34498 Sapria himalayana
SMO358G0257 Selaginella moellendorffii
Solyc03g097490.4 Solanum lycopersicum
Solyc06g072660.4 Solanum lycopersicum
Solyc07g065490.3 Solanum lycopersicum
Solyc10g006000.4 Solanum lycopersicum
Sopen03g028250 Solanum pennellii
Sopen06g029020 Solanum pennellii
Sopen07g033700 Solanum pennellii
Sopen10g001960 Solanum pennellii
Sp2g26640 Schrenkiella parvula
Sp5g13310 Schrenkiella parvula
Sp6g17570 Schrenkiella parvula
Sp7g24590 Schrenkiella parvula
TAR365G0374 Trochodendron aralioides
TAR371G0816 Trochodendron aralioides
TAR622G1215 Trochodendron aralioides
TAR624G0053 Trochodendron aralioides
TAR626G0122 Trochodendron aralioides
TAR629G2834 Trochodendron aralioides
TAR629G3059 Trochodendron aralioides
TAR629G3254 Trochodendron aralioides
THA.LOC104798937 Tarenaya hassleriana
THA.LOC104813447 Tarenaya hassleriana
THA.LOC104817704 Tarenaya hassleriana
THA.LOC104821525 Tarenaya hassleriana
Thecc.03G134300 Theobroma cacao
Thecc.07G014600 Theobroma cacao
Thhalv10010131m.g Eutrema salsugineum
Thhalv10012729m.g Eutrema salsugineum
Thhalv10024474m.g Eutrema salsugineum
TPR.G24131 Trifolium pratense
TPR.G24926 Trifolium pratense
TPR.G35259 Trifolium pratense
TPR.G8604 Trifolium pratense
TWI23G0259 Tripterygium wilfordii
TWI38G0208 Tripterygium wilfordii
TWI38G1767 Tripterygium wilfordii
TWI39G0486 Tripterygium wilfordii
TWI39G1172 Tripterygium wilfordii
unitig_61.g26372 Utricularia gibba
unitig_62.g23299 Utricularia gibba
vmacro09650 Vaccinium macrocarpon
vmacro19138 Vaccinium macrocarpon
VMungo0251G2519 Vigna mungo
VMungo0540G1466 Vigna mungo
VMungo0540G1473 Vigna mungo
VMungo1309G2677 Vigna mungo
Zm00001eb019900 Zea mays
Zm00001eb049840 Zea mays
Zm00001eb142940 Zea mays
Zm00001eb219310 Zea mays
Zm00001eb364070 Zea mays

User provided reference genes

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