Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p21300 Brassica napus
A06p17770 Brassica napus
A07p27990 Brassica napus
A08p28860 Brassica napus
A09p13490 Brassica napus
Aa31LG2G630 Aethionema arabicum
Aa31LG4G7480 Aethionema arabicum
Aa31LG7G5660 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4561 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4613 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1249 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.153 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.91 Anthoceros agrestis
Actinidia02032 Actinidia chinensis
Actinidia03460 Actinidia chinensis
Actinidia10894 Actinidia chinensis
Actinidia14531 Actinidia chinensis
Actinidia14532 Actinidia chinensis
Actinidia15224 Actinidia chinensis
Actinidia21297 Actinidia chinensis
Actinidia21298 Actinidia chinensis
Actinidia29478 Actinidia chinensis
Ah.01g003720 Amaranthus hybridus
Ah.04g153420 Amaranthus hybridus
Ah.05g170940 Amaranthus hybridus
Ah.13g075060 Amaranthus hybridus
AL1G34850 Arabidopsis lyrata
AL2G12350 Arabidopsis lyrata
AL2G37670 Arabidopsis lyrata
Aqoxy5G02375 Aquilegia oxysepala
Aqoxy5G03881 Aquilegia oxysepala
Aqoxy6G00254 Aquilegia oxysepala
Aqoxy7G00414 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0P0L33 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.414R5A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D58UPY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EB568G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N36HW8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R82D2M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YYBF8M Arachis hypogaea
AT1G21690 Arabidopsis thaliana
AT1G63160 Arabidopsis thaliana
AT1G77470 Arabidopsis thaliana
ATR0709G002 Amborella trichopoda
ATR0757G019 Amborella trichopoda
ATR1001G012 Amborella trichopoda
Atru.chr13.1511 Acer truncatum
Atru.chr13.1538 Acer truncatum
Atru.chr9.1557 Acer truncatum
AUR62008715 Chenopodium quinoa
AUR62010636 Chenopodium quinoa
AUR62014313 Chenopodium quinoa
AUR62017279 Chenopodium quinoa
AUR62019054 Chenopodium quinoa
AUR62025519 Chenopodium quinoa
AUR62043484 Chenopodium quinoa
BcaB02g07107 Brassica carinata
BcaB03g13874 Brassica carinata
BcaB05g25051 Brassica carinata
BcaB07g32165 Brassica carinata
BcaC02g10395 Brassica carinata
BcaC03g15740 Brassica carinata
BcaC04g22716 Brassica carinata
BcaC05g26087 Brassica carinata
BcaC06g31939 Brassica carinata
BcaC07g39111 Brassica carinata
BcaC08g45476 Brassica carinata
BolC2t09486H Brassica oleracea
BolC5t30765H Brassica oleracea
BolC6t38263H Brassica oleracea
BolC8t49737H Brassica oleracea
BolC9t54514H Brassica oleracea
BraA02t07148Z Brassica rapa
BraA02t07163Z Brassica rapa
BraA06t24869Z Brassica rapa
BraA07t30444Z Brassica rapa
BraA08t34817Z Brassica rapa
BraA09t37000Z Brassica rapa
C02p34610 Brassica napus
C04p29400 Brassica napus
C05p20660 Brassica napus
C06p31240 Brassica napus
C08p21000 Brassica napus
C09p15990 Brassica napus
CAN.G1352.4 Capsicum annuum
CAN.G1486.1 Capsicum annuum
CAN.G208.18 Capsicum annuum
CAN.G643.3 Capsicum annuum
CAN.G643.4 Capsicum annuum
CAN.G981.14 Capsicum annuum
CANSAT25G1662 Cannabis sativa
CANSAT25G2010 Cannabis sativa
CANSAT56G2008 Cannabis sativa
CARHR022040 Cardamine hirsuta
CARHR044130 Cardamine hirsuta
CARHR048340 Cardamine hirsuta
CARHR070990 Cardamine hirsuta
Carub.0001s2112 Capsella rubella
Carub.0002s0177 Capsella rubella
Carub.0002s2436 Capsella rubella
Ca_16563_v3 Cicer arietinum L.
Ca_16595_v3 Cicer arietinum L.
Ca_26106_v3 Cicer arietinum L.
CBR_g10932 Chara braunii
CBR_g49986 Chara braunii
CBR_g61472 Chara braunii
CBR_g61476 Chara braunii
Cc08_g14150 Coffea canephora
Cc10_g12180 Coffea canephora
Cc10_g12440 Coffea canephora
Cc10_g12450 Coffea canephora
Cc10_g12460 Coffea canephora
CDE06G1142 Ceratophyllum demersum
CDE06G1381 Ceratophyllum demersum
CDE07G1761 Ceratophyllum demersum
CDE08G1049 Ceratophyllum demersum
Cfa012117 Carpinus fangiana
Cfa018559 Carpinus fangiana
Cfa018570 Carpinus fangiana
Cfa022789 Carpinus fangiana
Cfa023452 Carpinus fangiana
Cfa025569 Carpinus fangiana
Ciclev10001485m.g Citrus clementina
Ciclev10001597m.g Citrus clementina
Ciclev10021080m.g Citrus clementina
CiPaw.11G139800 Carya illinoinensis
CiPaw.16G025200 Carya illinoinensis
CiPaw.16G025300 Carya illinoinensis
CiPaw.16G026200 Carya illinoinensis
ClCG00G000260 Citrullus lanatus
ClCG00G002270 Citrullus lanatus
ClCG00G003620 Citrullus lanatus
ClCG08G005860 Citrullus lanatus
ClCG10G003520 Citrullus lanatus
ClCG11G015940 Citrullus lanatus
COL.COLO4_03955 Corchorus olitorius
COL.COLO4_05257 Corchorus olitorius
COL.COLO4_37945 Corchorus olitorius
COL.COLO4_37946 Corchorus olitorius
COL.COLO4_37947 Corchorus olitorius
Cpa.g.sc64.112 Carica papaya
Cpa.g.sc64.131 Carica papaya
Cpa.g.sc64.132 Carica papaya
Cpa.g.sc74.70 Carica papaya
Cre06.g251800 Chlamydomonas reinhardtii
Cre07.g337150 Chlamydomonas reinhardtii
Cre12.g527300 Chlamydomonas reinhardtii
CsaV3_3G003530 Cucumis sativus L.
CsaV3_4G028050 Cucumis sativus L.
CsaV3_6G034260 Cucumis sativus L.
CsaV3_UNG115920 Cucumis sativus L.
CSS0001654 Camellia sinensis var. sinensis
CSS0002859 Camellia sinensis var. sinensis
CSS0028817 Camellia sinensis var. sinensis
CSS0032986 Camellia sinensis var. sinensis
CSS0035008 Camellia sinensis var. sinensis
CSS0038151 Camellia sinensis var. sinensis
CSS0043529 Camellia sinensis var. sinensis
DCAR_006126 Daucus carota
DCAR_006127 Daucus carota
DCAR_018873 Daucus carota
DCAR_019129 Daucus carota
DCAR_026835 Daucus carota
Dinv27272 Davidia involucrata
Dinv27288 Davidia involucrata
Dinv37676 Davidia involucrata
Dinv38996 Davidia involucrata
Dinv38997 Davidia involucrata
Duzib068G0329 Durio zibethinus
Duzib093G0261 Durio zibethinus
Duzib093G1303 Durio zibethinus
Duzib116G0621 Durio zibethinus
ECA232G1439 Erigeron canadensis
ECA246G0547 Erigeron canadensis
ECA246G2621 Erigeron canadensis
EL10Ac1g01041 Beta vulgaris
EL10Ac2g03027 Beta vulgaris
EL10Ac5g12744 Beta vulgaris
Eucgr.D01911 Eucalyptus grandis
Eucgr.F04332 Eucalyptus grandis
Eucgr.F04342 Eucalyptus grandis
FAN04G2109 Fragaria x ananassa
FAN08G2896 Fragaria x ananassa
FAN13G0597 Fragaria x ananassa
FAN15G1146 Fragaria x ananassa
FAN15G1662 Fragaria x ananassa
FAN18G1742 Fragaria x ananassa
FAN20G1865 Fragaria x ananassa
FAN20G2509 Fragaria x ananassa
FAN24G1004 Fragaria x ananassa
FAN24G2905 Fragaria x ananassa
FAN27G0086 Fragaria x ananassa
FAN27G2248 Fragaria x ananassa
FvH4_2g27410 Fragaria vesca
FvH4_2g27570 Fragaria vesca
FvH4_5g01730 Fragaria vesca
Glyma.04G215000 Glycine max
Glyma.04G246800 Glycine max
Glyma.04G248900 Glycine max
Glyma.05G048900 Glycine max
Glyma.06G114100 Glycine max
Glyma.06G116000 Glycine max
Glyma.17G130800 Glycine max
Gohir.A03G018100 Gossypium hirsutum
Gohir.A04G057126 Gossypium hirsutum
Gohir.A05G236800 Gossypium hirsutum
Gohir.A06G046900 Gossypium hirsutum
Gohir.A06G118900 Gossypium hirsutum
Gohir.D03G153500 Gossypium hirsutum
Gohir.D05G238900 Gossypium hirsutum
Gohir.D06G047200 Gossypium hirsutum
Gorai.003G161100 Gossypium raimondii
Gorai.009G247600 Gossypium raimondii
Gorai.010G052800 Gossypium raimondii
GSVIVG01008825001 Vitis vinifera
GSVIVG01008841001 Vitis vinifera
GSVIVG01019825001 Vitis vinifera
HanXRQChr01g0013731 Helianthus annuus
HanXRQChr06g0165451 Helianthus annuus
HanXRQChr11g0326191 Helianthus annuus
HanXRQChr17g0541081 Helianthus annuus
Haze_08933 Corylus avellana
Haze_17510 Corylus avellana
Haze_17520 Corylus avellana
Haze_26586 Corylus avellana
Haze_27319 Corylus avellana
Haze_27338 Corylus avellana
Haze_27379 Corylus avellana
Hma1.2p1_0054F.1_g031130 Hydrangea macrophylla
Hma1.2p1_0129F.1_g060420 Hydrangea macrophylla
Hma1.2p1_0129F.1_g060430 Hydrangea macrophylla
Hma1.2p1_0371F.1_g138060 Hydrangea macrophylla
Hma1.2p1_0542F.1_g175030 Hydrangea macrophylla
HPP92_019331 Vanilla planifolia
HPP92_021488 Vanilla planifolia
HPP92_025581 Vanilla planifolia
HPP92_025584 Vanilla planifolia
Hund11517 Selenicereus undatus
Hund17307 Selenicereus undatus
Hund26791 Selenicereus undatus
Lalb_Chr08g0241231 Lupinus albus
Lalb_Chr09g0333241 Lupinus albus
Lalb_Chr11g0065951 Lupinus albus
Lj1g0008455 Lotus japonicus
Lj1g0021925 Lotus japonicus
Lj2A194T57 Lonicera japonica
Lj4A633G16 Lonicera japonica
Lj4g0008217 Lotus japonicus
Lj7C346G4 Lonicera japonica
Lsat_1_v5_gn_3_34541 Lactuca sativa
Lsat_1_v5_gn_3_5320 Lactuca sativa
Lsat_1_v5_gn_5_59861 Lactuca sativa
Lsat_1_v5_gn_9_71120 Lactuca sativa
Manes.02G025701 Manihot esculenta
Manes.02G166700 Manihot esculenta
Manes.18G079501 Manihot esculenta
Mapoly0014s0096 Marchantia polymorpha
Mapoly0016s0108 Marchantia polymorpha
Mapoly0024s0100 Marchantia polymorpha
MBI06_g04545_MAGBIO Magnolia biondii
MBI06_g33105_MAGBIO Magnolia biondii
MBI06_g45440_MAGBIO Magnolia biondii
MBI12_g43906_MAGBIO Magnolia biondii
MCO01G698 Micromonas commoda
MCO10G401 Micromonas commoda
MCO13G571 Micromonas commoda
MD00G1028800 Malus domestica
MD00G1201700 Malus domestica
MD04G1065200 Malus domestica
MD15G1344500 Malus domestica
MD15G1345200 Malus domestica
MD15G1345300 Malus domestica
Medtr3g088120 Medicago truncatula
Medtr3g088380 Medicago truncatula
Medtr4g102700 Medicago truncatula
Medtr4g102860 Medicago truncatula
MELO3C010507.2 Cucumis melo
MELO3C010631.2 Cucumis melo
MELO3C014020.2 Cucumis melo
Migut.A00936 Erythranthe guttata
Migut.C01109 Erythranthe guttata
Migut.L00248 Erythranthe guttata
Migut.O00855 Erythranthe guttata
MSTRG.13828 Avicennia marina
MSTRG.1421 Avicennia marina
MSTRG.25372 Avicennia marina
Nitab4.5_0000111g0110 Nicotiana tabacum
Nitab4.5_0000322g0050 Nicotiana tabacum
Nitab4.5_0000713g0120 Nicotiana tabacum
Nitab4.5_0002018g0060 Nicotiana tabacum
Nitab4.5_0003924g0060 Nicotiana tabacum
Nitab4.5_0004097g0030 Nicotiana tabacum
Nitab4.5_0004502g0050 Nicotiana tabacum
Nitab4.5_0005213g0030 Nicotiana tabacum
Nitab4.5_0005296g0020 Nicotiana tabacum
Nitab4.5_0006720g0030 Nicotiana tabacum
Nn1g08900 Nelumbo nucifera
Nn5g28359 Nelumbo nucifera
Nn6g34210 Nelumbo nucifera
Oeu001535.1 Olea europaea
Oeu001536.1 Olea europaea
Oeu032206.1 Olea europaea
Oeu037225.1 Olea europaea
Oeu062741.1 Olea europaea
Os02g0775200 Oryza sativa ssp. japonica
Os04g0569000 Oryza sativa ssp. japonica
Os12g0176500 Oryza sativa ssp. japonica
Peaxi162Scf00051g01416 Petunia axillaris
Peaxi162Scf00310g00416 Petunia axillaris
Peaxi162Scf00714g00327 Petunia axillaris
PGR031G1951 Punica granatum
PGR044G0286 Punica granatum
PGR044G0726 Punica granatum
PGSC0003DMG400003051 Solanum tuberosum
PGSC0003DMG400006047 Solanum tuberosum
PGSC0003DMG402029181 Solanum tuberosum
Phvul.003G211700 Phaseolus vulgaris
Phvul.009G126000 Phaseolus vulgaris
Phvul.009G128066 Phaseolus vulgaris
Phvul.009G128132 Phaseolus vulgaris
Potri.002G080100 Populus trichocarpa
Potri.002G081200 Populus trichocarpa
Potri.003G123200 Populus trichocarpa
Potri.005G180001 Populus trichocarpa
Potri.005G181300 Populus trichocarpa
Pp3c13_4510 Physcomitrium patens
Pp3c16_21800 Physcomitrium patens
Pp3c3_37360 Physcomitrium patens
PRCOL_00000131 Prasinoderma coloniale
PRCOL_00002254 Prasinoderma coloniale
PRCOL_00005755 Prasinoderma coloniale
Prupe.1G492200 Prunus persica
Prupe.1G493300 Prunus persica
Prupe.8G039600 Prunus persica
Psat4g066840 Pisum sativum
Psat5g085800 Pisum sativum
Psat5g086560 Pisum sativum
PSO170G0410 Papaver somniferum
PSO478G2732 Papaver somniferum
PSO528G0178 Papaver somniferum
PSO541G1645 Papaver somniferum
PSO675G8498 Papaver somniferum
PSO782G0171 Papaver somniferum
QL09p033191 Quercus lobata
QL09p033894 Quercus lobata
QL12p017541 Quercus lobata
RcHm_v2.0_Chr6g0296261 Rosa chinensis
RcHm_v2.0_Chr6g0296411 Rosa chinensis
RcHm_v2.0_Chr7g0198991 Rosa chinensis
Rhsim06G0130900 Rhododendron simsii
Rhsim07G0093500 Rhododendron simsii
Rhsim11G0069700 Rhododendron simsii
RhsimUnG0002700 Rhododendron simsii
Sabra02G0063600 Salix brachista
Sabra03G0086900 Salix brachista
Sabra05G0137300 Salix brachista
SalBow1G8365 Salvia bowleyana
SalBow7G0673 Salvia bowleyana
SalBow7G2997 Salvia bowleyana
Sc01g0008690 Simmondsia chinensis
Sc02g0005030 Simmondsia chinensis
Sc07g0004500 Simmondsia chinensis
Sed0016995 Sechium edule
Sed0019306 Sechium edule
Sed0023365 Sechium edule
SEGI_01081 Sequoiadendron giganteum
SEGI_03481 Sequoiadendron giganteum
SEGI_05683 Sequoiadendron giganteum
SEGI_11240 Sequoiadendron giganteum
SEGI_33622 Sequoiadendron giganteum
SGA_v2.0_scaffold24G10439 Striga asiatica
SGA_v2.0_scaffold385G50457 Striga asiatica
SGA_v2.0_scaffold52G18933 Striga asiatica
SGA_v2.0_scaffold52G18953 Striga asiatica
SGA_v2.0_scaffold8G04242 Striga asiatica
SHI06323 Sapria himalayana
SHI06325 Sapria himalayana
SHI06331 Sapria himalayana
SHI07200 Sapria himalayana
SHI07202 Sapria himalayana
SHI27317 Sapria himalayana
SHI31507 Sapria himalayana
SMO118G0101 Selaginella moellendorffii
SMO308G0051 Selaginella moellendorffii
SMO329G0082 Selaginella moellendorffii
Solyc06g060150.3 Solanum lycopersicum
Solyc08g080510.4 Solanum lycopersicum
Solyc11g012820.2 Solanum lycopersicum
Sopen06g020270 Solanum pennellii
Sopen08g028830 Solanum pennellii
Sopen11g007560 Solanum pennellii
Sp1g19230 Schrenkiella parvula
Sp2g01430 Schrenkiella parvula
Sp5g32630 Schrenkiella parvula
TAR375G0045 Trochodendron aralioides
TAR376G0409 Trochodendron aralioides
TAR381G1563 Trochodendron aralioides
TAR628G0775 Trochodendron aralioides
TAR636G0908 Trochodendron aralioides
THA.LOC104800207 Tarenaya hassleriana
THA.LOC104800216 Tarenaya hassleriana
THA.LOC104809417 Tarenaya hassleriana
Thecc.03G272700 Theobroma cacao
Thecc.08G128800 Theobroma cacao
Thecc.08G130000 Theobroma cacao
Thecc.08G130500 Theobroma cacao
Thhalv10008129m.g Eutrema salsugineum
Thhalv10018756m.g Eutrema salsugineum
Thhalv10023584m.g Eutrema salsugineum
TPR.G13461 Trifolium pratense
TPR.G19233 Trifolium pratense
TPR.G21071 Trifolium pratense
TPR.G39634 Trifolium pratense
TPR.G40868 Trifolium pratense
TWI32G1289 Tripterygium wilfordii
TWI60G0010 Tripterygium wilfordii
TWI60G0500 Tripterygium wilfordii
TWI60G1154 Tripterygium wilfordii
unitig_22.g5493 Utricularia gibba
unitig_26.g9708 Utricularia gibba
unitig_52.g17218 Utricularia gibba
vmacro00787 Vaccinium macrocarpon
vmacro00847 Vaccinium macrocarpon
vmacro12378 Vaccinium macrocarpon
vmacro13929 Vaccinium macrocarpon
vmacro13930 Vaccinium macrocarpon
VMungo1215G1489 Vigna mungo
VMungo1309G0926 Vigna mungo
Zm00001eb256550 Zea mays
Zm00001eb408240 Zea mays
Zm00001eb428750 Zea mays

User provided reference genes

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