Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21188 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 3.4e-49 198.0 96 100.0
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 7.3e-36 153.7 82 89.0
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 3.9e-29 131.3 82 76.8
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 6.6e-29 130.6 77 79.2
CSS0043854 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 7.3e-28 127.1 82 74.4
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 3.1e-26 121.7 82 69.5
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 1.4e-23 112.8 82 65.9
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 2.4e-23 112.1 89 62.9
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 3.2e-23 111.7 82 64.6
DCAR_029679 Daucus carota HOM05D003957 ORTHO05D004833 7.1e-23 110.5 84 66.7
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 1.2e-22 109.8 90 60.0
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.6e-22 109.4 90 60.0
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 2.1e-22 109.0 84 59.5
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 2.7e-22 108.6 81 64.2
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 3.5e-22 108.2 83 65.1
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 4.6e-22 107.8 89 60.7
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 4.6e-22 107.8 82 62.2
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 6.0e-22 107.5 82 61.0
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 7.8e-22 107.1 83 63.9
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 7.8e-22 107.1 82 61.0
Duzib138G0145 Durio zibethinus HOM05D003957 ORTHO05D004833 7.8e-22 107.1 89 59.6
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 1.0e-21 106.7 82 61.0
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 1.0e-21 106.7 77 61.0
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 1.3e-21 106.3 83 63.9
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.3e-21 106.3 84 58.3
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.3e-21 106.3 84 58.3
FAN03G1487 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.7e-21 105.9 84 58.3
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.7e-21 105.9 90 58.9
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 2.3e-21 105.5 89 57.3
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 3.0e-21 105.1 84 61.9
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 3.9e-21 104.8 82 62.2
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 3.9e-21 104.8 81 66.7
RcHm_v2.0_Chr1g0316481 Rosa chinensis HOM05D003957 ORTHO05D037444 5.1e-21 104.4 77 61.0
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 6.6e-21 104.0 82 62.2
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 8.6e-21 103.6 82 59.8
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 8.6e-21 103.6 77 64.9
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 1.5e-20 102.8 82 62.2
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 1.9e-20 102.4 72 63.9
Sc11g0009110 Simmondsia chinensis HOM05D003957 ORTHO05D004833 1.9e-20 102.4 82 59.8
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 2.5e-20 102.1 89 57.3
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 2.5e-20 102.1 84 57.1
Lalb_Chr01g0000361 Lupinus albus HOM05D003957 ORTHO05D004833 2.5e-20 102.1 82 61.0
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 2.5e-20 102.1 83 61.4
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 3.3e-20 101.7 80 58.8
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 4.3e-20 101.3 82 61.0
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 5.6e-20 100.9 81 63.0
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 5.6e-20 100.9 84 59.5
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 5.6e-20 100.9 75 66.7
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 5.6e-20 100.9 79 59.5
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 7.3e-20 100.5 82 61.0
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 7.3e-20 100.5 84 57.1
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 9.5e-20 100.1 79 59.5
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 9.5e-20 100.1 82 57.3
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 9.5e-20 100.1 89 56.2
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 9.5e-20 100.1 89 56.2
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 1.2e-19 99.8 79 60.8
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 1.6e-19 99.4 77 57.1
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 2.1e-19 99.0 82 61.0
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 2.1e-19 99.0 79 58.2
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 2.1e-19 99.0 79 59.5
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 2.8e-19 98.6 79 55.7
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 2.8e-19 98.6 82 59.8
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 4.7e-19 97.8 79 57.0
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 6.2e-19 97.4 82 57.3
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 8.1e-19 97.1 82 57.3
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 8.1e-19 97.1 79 59.5
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 8.1e-19 97.1 82 57.3
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 8.1e-19 97.1 79 59.5
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 8.1e-19 97.1 82 57.3
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 1.1e-18 96.7 80 58.8
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 1.1e-18 96.7 79 55.7
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 3.1e-18 95.1 83 60.2
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 4.0e-18 94.7 71 62.0
Psat7g196440 Pisum sativum HOM05D003957 ORTHO05D004833 4.0e-18 94.7 83 57.8
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 5.2e-18 94.4 78 59.0
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 6.8e-18 94.0 82 56.1
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 6.8e-18 94.0 86 53.5
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 8.9e-18 93.6 79 60.8
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 1.2e-17 93.2 79 54.4
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 2.6e-17 92.0 83 57.8
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 2.6e-17 92.0 83 57.8
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 2.6e-17 92.0 77 57.1
HPP92_013483 Vanilla planifolia HOM05D003957 ORTHO05D004833 3.4e-17 91.7 83 54.2
HPP92_026038 Vanilla planifolia HOM05D003957 ORTHO05D004833 3.4e-17 91.7 83 54.2
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 4.4e-17 91.3 86 53.5
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 4.4e-17 91.3 78 59.0
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 4.4e-17 91.3 86 53.5
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 4.4e-17 91.3 71 59.2
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 4.4e-17 91.3 81 58.0
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 5.8e-17 90.9 83 56.6
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 5.8e-17 90.9 78 57.7
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 7.6e-17 90.5 86 51.2
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 7.6e-17 90.5 77 53.2
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 9.9e-17 90.1 78 56.4
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 9.9e-17 90.1 78 56.4
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 9.9e-17 90.1 78 56.4
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 9.9e-17 90.1 78 55.1
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 9.9e-17 90.1 81 56.8
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 9.9e-17 90.1 78 56.4
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 1.7e-16 89.4 89 51.7
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 2.2e-16 89.0 78 55.1
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 2.2e-16 89.0 82 53.7
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 2.2e-16 89.0 79 50.6
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 2.2e-16 89.0 77 51.9
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 2.9e-16 88.6 77 51.9
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 2.9e-16 88.6 81 55.6
Aa31LG11G7410 Aethionema arabicum HOM05D003957 ORTHO05D004833 3.7e-16 88.2 78 55.1
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 4.9e-16 87.8 77 53.2
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 4.9e-16 87.8 77 53.2
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 8.3e-16 87.0 79 49.4
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 1.1e-15 86.7 83 54.2
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 1.1e-15 86.7 83 54.2
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 1.4e-15 86.3 77 51.9
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 1.4e-15 86.3 77 51.9
unitig_749.g13713 Utricularia gibba HOM05D003957 ORTHO05D004833 1.4e-15 86.3 81 54.3
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 1.9e-15 85.9 83 55.4
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 1.9e-15 85.9 74 54.1
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 1.9e-15 85.9 83 53.0
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 2.4e-15 85.5 83 54.2
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.4e-15 85.5 63 65.1
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.4e-15 85.5 63 65.1
Carub.0005s3012 Capsella rubella HOM05D003957 ORTHO05D004833 3.2e-15 85.1 83 54.2
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 3.2e-15 85.1 84 54.8
unitig_749.g14329 Utricularia gibba HOM05D003957 ORTHO05D004833 5.4e-15 84.3 83 55.4
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 7.1e-15 84.0 82 50.0
Oeu006567.1 Olea europaea HOM05D003957 ORTHO05D004833 9.2e-15 83.6 68 55.9
Ah.00g001360 Amaranthus hybridus HOM05D003957 ORTHO05D004833 1.2e-14 83.2 79 46.8
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 2.1e-14 82.4 85 50.6
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 4.6e-14 81.3 62 61.3
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 6.0e-14 80.9 84 54.8
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 7.8e-14 80.5 81 53.1
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 1.7e-13 79.3 75 52.0
Aa31LG10G17380 Aethionema arabicum HOM05D003957 ORTHO05D004833 2.3e-13 79.0 84 51.2
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 3.0e-13 78.6 78 51.3
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 8.6e-13 77.0 78 51.3
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 4.4e-09 64.7 73 49.3
Thecc.09G345400 Theobroma cacao HOM05D003957 ORTHO05D037444 6.0e-06 54.3 51 51.0


User provided reference genes

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