Gene: Solyc01g087290.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g087290.3
  • Transcript Identifier Solyc01g087290.3.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 74468628-74475689 : negative

Gene Family Information

  • ID HOM05D003957
  • #Genes/#Species 176/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g087290.3.1
  • uniprot A0A3Q7EIK5
  • gene_id Solyc01g087290

Descriptions

  • Description tRNA-dihydrouridine synthase (AHRD V3.3 *** A0A2G3DGY4_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0002943
IEA
GOA DatabasetRNA dihydrouridine synthesis
GO:0002943
IEA
InterProtRNA dihydrouridine synthesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0017150
IEA
GOA DatabasetRNA dihydrouridine synthase activity
GO:0017150
IEA
InterProtRNA dihydrouridine synthase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G47970
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G47970
GO:0009524
ISO
PLAZA Integrative Orthologyphragmoplast AT5G47970

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013785 Aldolase-type TIM barrel
IPR035587 DUS-like, FMN-binding domain
IPR004653 tRNA-dihydrouridine(20/20a) synthase
Mapman id Description
16.5.4.1 RNA processing.RNA modification.dihydrouridylation.tRNA dihydrouridine synthase