Gene: AT5G47970

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G47970
  • Transcript Identifier AT5G47970.1
  • Gene Type Coding gene
  • Location Chr5 : 19423420-19425585 : positive

Gene Family Information

  • ID HOM05D003957
  • #Genes/#Species 176/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G47970.1
  • uniprot Q9FI41

Descriptions

  • Description Aldolase-type TIM barrel family protein
  • Computational description Aldolase-type TIM barrel family protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; LOCATED IN: nucleus, cytoplasm, phragmoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: FMN-linked oxidoreductases superfamily protein (TAIR:AT3G63510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0002943
IEA
Gene OntologytRNA dihydrouridine synthesis
GO:0002943
IEA
InterProtRNA dihydrouridine synthesis
GO:0008033
IEA
GOA DatabasetRNA processing
GO:0008033
IEA
InterProtRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0050660
IEA
Gene Ontologyflavin adenine dinucleotide binding
GO:0050660
IEA
InterProflavin adenine dinucleotide binding
GO:0017150
IEA
Gene OntologytRNA dihydrouridine synthase activity
GO:0017150
IEA
InterProtRNA dihydrouridine synthase activity
GO:0016491
IEA
GOA Databaseoxidoreductase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IDA
GOA Databasecytoplasm
GO:0005737
HDA
Gene Ontologycytoplasm1
GO:0005634
IDA
GOA Databasenucleus
GO:0005634
HDA
Gene Ontologynucleus1
GO:0009524
IDA
GOA Databasephragmoplast
GO:0009524
HDA
Gene Ontologyphragmoplast1
GO:0005829
HDA
Gene Ontologycytosol2
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001269 tRNA-dihydrouridine synthase
IPR035587 DUS-like, FMN-binding domain
IPR013785 Aldolase-type TIM barrel
IPR004653 tRNA-dihydrouridine(20/20a) synthase
Mapman id Description
16.5.4.1 RNA processing.RNA modification.dihydrouridylation.tRNA dihydrouridine synthase