Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20096 Vaccinium macrocarpon HOM05D002912 ORTHO05D003191 1.4e-156 556.6 371 100.0
Rhsim05G0184800 Rhododendron simsii HOM05D002912 ORTHO05D003191 4.5e-33 146.4 340 48.5
Actinidia19735 Actinidia chinensis HOM05D002912 ORTHO05D003191 1.3e-16 91.7 263 43.3
Haze_16967 Corylus avellana HOM05D002912 ORTHO05D003191 1.8e-13 81.3 144 41.0
Hund22436 Selenicereus undatus HOM05D002912 ORTHO05D003191 7.4e-12 75.9 136 39.7
Actinidia38227 Actinidia chinensis HOM05D002912 ORTHO05D003191 9.7e-12 75.5 90 47.8
CSS0016616 Camellia sinensis var. sinensis HOM05D002912 ORTHO05D003191 9.7e-12 75.5 287 41.5
unitig_16.g32856 Utricularia gibba HOM05D002912 ORTHO05D003191 1.3e-11 75.1 93 50.5
Lj2C103T9 Lonicera japonica HOM05D002912 ORTHO05D003191 3.7e-11 73.6 144 33.3
HanXRQChr14g0460761 Helianthus annuus HOM05D002912 ORTHO05D003191 1.4e-10 71.6 120 39.2
PSO699G0046 Papaver somniferum HOM05D002912 ORTHO05D003191 1.4e-10 71.6 40 77.5
TAR623G1333 Trochodendron aralioides HOM05D002912 ORTHO05D003191 2.4e-10 70.9 87 46.0
Peaxi162Scf00597g00058 Petunia axillaris HOM05D002912 ORTHO05D003191 4.1e-10 70.1 135 40.0
AUR62043533 Chenopodium quinoa HOM05D002912 ORTHO05D003191 5.3e-10 69.7 131 38.9
AUR62043802 Chenopodium quinoa HOM05D002912 ORTHO05D003191 5.3e-10 69.7 131 38.9
TAR633G0383 Trochodendron aralioides HOM05D002912 ORTHO05D003191 5.3e-10 69.7 301 38.2
ATR0681G041 Amborella trichopoda HOM05D002912 ORTHO05D003191 1.2e-09 68.6 40 75.0
MBI14_g22979_MAGBIO Magnolia biondii HOM05D002912 ORTHO05D003191 1.2e-09 68.6 40 75.0
Manes.09G072000 Manihot esculenta HOM05D002912 ORTHO05D003191 1.2e-09 68.6 286 37.8
Nn2g10557 Nelumbo nucifera HOM05D002912 ORTHO05D003191 1.2e-09 68.6 40 75.0
PSO384G2378 Papaver somniferum HOM05D002912 ORTHO05D003191 1.2e-09 68.6 40 75.0
CSS0027380 Camellia sinensis var. sinensis HOM05D002912 ORTHO05D003191 2.6e-09 67.4 322 34.8
Haze_20697 Corylus avellana HOM05D002912 ORTHO05D003191 2.6e-09 67.4 93 40.9
GSVIVG01025580001 Vitis vinifera HOM05D002912 ORTHO05D003191 2.6e-09 67.4 40 72.5
GSVIVG01032633001 Vitis vinifera HOM05D002912 ORTHO05D003191 2.6e-09 67.4 40 72.5
Dinv35673 Davidia involucrata HOM05D000419 ORTHO05D000692 3.5e-09 67.0 41 70.7
TAR636G0593 Trochodendron aralioides HOM05D002912 ORTHO05D003191 3.5e-09 67.0 40 72.5
Gohir.A05G343100 Gossypium hirsutum HOM05D002912 ORTHO05D003191 5.9e-09 66.2 91 42.9
Sopen05g033380 Solanum pennellii HOM05D002912 ORTHO05D003191 5.9e-09 66.2 90 42.2
PGSC0003DMG402023504 Solanum tuberosum HOM05D002912 ORTHO05D003191 5.9e-09 66.2 90 42.2
Cpa.g.sc114.20 Carica papaya HOM05D002912 ORTHO05D003191 7.7e-09 65.9 286 52.1
CDE02G4187 Ceratophyllum demersum HOM05D002912 ORTHO05D003191 7.7e-09 65.9 53 58.5
Cc02_g08690 Coffea canephora HOM05D002912 ORTHO05D003191 7.7e-09 65.9 102 39.2
Aqoxy4G03099 Aquilegia oxysepala HOM05D002912 ORTHO05D003191 1.0e-08 65.5 40 75.0
arahy.Tifrunner.gnm1.ann1.6ZDT16 Arachis hypogaea HOM05D002912 ORTHO05D003191 1.0e-08 65.5 90 42.2
arahy.Tifrunner.gnm1.ann1.U08GD1 Arachis hypogaea HOM05D002912 ORTHO05D003191 1.0e-08 65.5 90 42.2
Lj3C975T6 Lonicera japonica HOM05D002912 ORTHO05D003191 1.0e-08 65.5 40 67.5
Nitab4.5_0000914g0130 Nicotiana tabacum HOM05D002912 ORTHO05D003191 1.0e-08 65.5 90 43.3
Cfa017463 Carpinus fangiana HOM05D002912 ORTHO05D003191 1.3e-08 65.1 90 41.1
Gorai.012G091800 Gossypium raimondii HOM05D002912 ORTHO05D003191 1.7e-08 64.7 90 42.2
Rhsim03G0125000 Rhododendron simsii HOM05D002912 ORTHO05D003191 1.7e-08 64.7 90 42.2
TPR.G36918 Trifolium pratense HOM05D002912 ORTHO05D003191 1.7e-08 64.7 90 41.1
Duzib114G0437 Durio zibethinus HOM05D002912 ORTHO05D003191 2.2e-08 64.3 90 41.1
Gohir.A10G208800 Gossypium hirsutum HOM05D002912 ORTHO05D003191 2.2e-08 64.3 90 41.1
Gohir.D10G217100 Gossypium hirsutum HOM05D002912 ORTHO05D003191 2.2e-08 64.3 90 41.1
Gorai.011G242700 Gossypium raimondii HOM05D002912 ORTHO05D003191 2.2e-08 64.3 90 41.1
Nitab4.5_0000643g0180 Nicotiana tabacum HOM05D002912 ORTHO05D003191 2.2e-08 64.3 91 41.8
Peaxi162Scf00015g00272 Petunia axillaris HOM05D002912 ORTHO05D003191 2.2e-08 64.3 335 34.0
Thecc.10G063400 Theobroma cacao HOM05D002912 ORTHO05D003191 2.2e-08 64.3 90 41.1
TAR375G0384 Trochodendron aralioides HOM05D002912 ORTHO05D003191 2.2e-08 64.3 40 70.0
CDE09G1066 Ceratophyllum demersum HOM05D002912 ORTHO05D003191 2.9e-08 63.9 40 67.5
Gohir.A06G177900 Gossypium hirsutum HOM05D002912 ORTHO05D003191 2.9e-08 63.9 90 42.2
Gohir.D06G173700 Gossypium hirsutum HOM05D002912 ORTHO05D003191 2.9e-08 63.9 90 42.2
Gorai.010G203100 Gossypium raimondii HOM05D002912 ORTHO05D003191 2.9e-08 63.9 90 42.2
Solyc09g005980.4 Solanum lycopersicum HOM05D002912 ORTHO05D003191 2.9e-08 63.9 90 42.2
PGSC0003DMG400023919 Solanum tuberosum HOM05D002912 ORTHO05D003191 2.9e-08 63.9 90 42.2
COL.COLO4_05801 Corchorus olitorius HOM05D002912 ORTHO05D003191 3.8e-08 63.5 90 40.0
Duzib106G1529 Durio zibethinus HOM05D002912 ORTHO05D003191 3.8e-08 63.5 90 40.0
Gohir.D13G021300 Gossypium hirsutum HOM05D002912 ORTHO05D003191 3.8e-08 63.5 90 41.1
Gorai.013G024100 Gossypium raimondii HOM05D002912 ORTHO05D003191 3.8e-08 63.5 90 41.1
Lj1g0023413 Lotus japonicus HOM05D002912 ORTHO05D003191 3.8e-08 63.5 40 70.0
Prupe.6G246100 Prunus persica HOM05D002912 ORTHO05D003191 3.8e-08 63.5 40 67.5
Aa31LG1G22180 Aethionema arabicum HOM05D002912 ORTHO05D003191 5.0e-08 63.2 106 39.6
DCAR_009265 Daucus carota HOM05D002912 ORTHO05D003191 5.0e-08 63.2 90 40.0
Dinv37228 Davidia involucrata HOM05D002912 ORTHO05D003191 5.0e-08 63.2 299 40.1
Actinidia13846 Actinidia chinensis HOM05D002912 ORTHO05D003191 6.5e-08 62.8 41 68.3
Carub.0003s0868 Capsella rubella HOM05D002912 ORTHO05D003191 6.5e-08 62.8 106 37.7
Duzib128G1379 Durio zibethinus HOM05D002912 ORTHO05D003191 6.5e-08 62.8 90 40.0
Thhalv10014414m.g Eutrema salsugineum HOM05D002912 ORTHO05D003191 6.5e-08 62.8 58 58.6
Nitab4.5_0006252g0030 Nicotiana tabacum HOM05D000419 ORTHO05D000692 6.5e-08 62.8 89 42.7
Sp6g39870 Schrenkiella parvula HOM05D002912 ORTHO05D003191 6.5e-08 62.8 58 56.9
EL10Ac2g03513 Beta vulgaris HOM05D002912 ORTHO05D003191 8.5e-08 62.4 89 41.6
Sabra06G0166100 Salix brachista HOM05D002912 ORTHO05D003191 8.5e-08 62.4 90 41.1
CANSAT56G4039 Cannabis sativa HOM05D002912 ORTHO05D003191 1.1e-07 62.0 41 63.4
ECA238G4642 Erigeron canadensis HOM05D002912 ORTHO05D003191 1.1e-07 62.0 40 70.0
Lj8C93T4 Lonicera japonica HOM05D002912 ORTHO05D003191 1.1e-07 62.0 40 70.0
TWI74G0490 Tripterygium wilfordii HOM05D002912 ORTHO05D003191 1.1e-07 62.0 90 41.1
MSTRG.19116 Avicennia marina HOM05D002912 ORTHO05D003191 1.5e-07 61.6 90 41.1
MSTRG.5705 Avicennia marina HOM05D002912 ORTHO05D003191 1.5e-07 61.6 90 41.1
Ca_08805_v3 Cicer arietinum L. HOM05D002912 ORTHO05D003191 1.5e-07 61.6 37 70.3
Gohir.D04G080900 Gossypium hirsutum HOM05D002912 ORTHO05D003191 1.5e-07 61.6 41 65.9
Lsat_1_v5_gn_1_54761 Lactuca sativa HOM05D002912 ORTHO05D003191 1.5e-07 61.6 40 65.0
Lsat_1_v5_gn_2_115240 Lactuca sativa HOM05D002912 ORTHO05D003191 1.5e-07 61.6 99 40.4
Lj1g0023882 Lotus japonicus HOM05D002912 ORTHO05D003191 1.5e-07 61.6 90 40.0
Potri.006G215200 Populus trichocarpa HOM05D002912 ORTHO05D003191 1.5e-07 61.6 90 40.0
CARHR210700 Cardamine hirsuta HOM05D002912 ORTHO05D003191 1.9e-07 61.2 41 65.9
FAN01G2148 Fragaria x ananassa HOM05D005234 ORTHO05D006583 1.9e-07 61.2 36 69.4
FAN01G2697 Fragaria x ananassa HOM05D005234 ORTHO05D006583 1.9e-07 61.2 36 69.4
Oeu037763.2 Olea europaea HOM05D002912 ORTHO05D003191 1.9e-07 61.2 90 40.0
Phvul.001G172700 Phaseolus vulgaris HOM05D002912 ORTHO05D003191 1.9e-07 61.2 40 65.0
Psat0s3540g0040 Pisum sativum HOM05D002912 ORTHO05D003191 1.9e-07 61.2 41 61.0
BolC5t34499H Brassica oleracea HOM05D002912 ORTHO05D003191 2.5e-07 60.8 59 55.9
Migut.J00390 Erythranthe guttata HOM05D002912 ORTHO05D003191 2.5e-07 60.8 90 40.0
MD12G1131700 Malus domestica HOM05D002912 ORTHO05D003191 2.5e-07 60.8 40 62.5
Oeu025612.1 Olea europaea HOM05D002912 ORTHO05D003191 2.5e-07 60.8 90 38.9
PSO339G4076 Papaver somniferum HOM05D002912 ORTHO05D003191 2.5e-07 60.8 40 67.5
PSO384G0018 Papaver somniferum HOM05D002912 ORTHO05D003191 2.5e-07 60.8 40 67.5
Potri.016G081700 Populus trichocarpa HOM05D002912 ORTHO05D003191 2.5e-07 60.8 90 40.0
Sabra16G0089500 Salix brachista HOM05D002912 ORTHO05D003191 2.5e-07 60.8 90 40.0
Solyc05g054920.4 Solanum lycopersicum HOM05D002912 ORTHO05D003191 2.5e-07 60.8 336 33.3
THA.LOC104826998 Tarenaya hassleriana HOM05D002912 ORTHO05D003191 2.5e-07 60.8 89 40.4
Atru.chr12.597 Acer truncatum HOM05D002912 ORTHO05D003191 3.2e-07 60.5 40 65.0
Actinidia03007 Actinidia chinensis HOM05D002912 ORTHO05D003191 3.2e-07 60.5 41 63.4
Ciclev10032170m.g Citrus clementina HOM05D002912 ORTHO05D003191 3.2e-07 60.5 40 65.0
ECA248G3238 Erigeron canadensis HOM05D002912 ORTHO05D003191 3.2e-07 60.5 89 39.3
Migut.L01640 Erythranthe guttata HOM05D002912 ORTHO05D003191 3.2e-07 60.5 90 41.1
Lalb_Chr06g0171181 Lupinus albus HOM05D002912 ORTHO05D003191 3.2e-07 60.5 40 65.0
MD07G1184300 Malus domestica HOM05D002912 ORTHO05D003191 3.2e-07 60.5 40 65.0
Oeu035163.1 Olea europaea HOM05D002912 ORTHO05D003191 3.2e-07 60.5 90 41.1
PGR044G0052 Punica granatum HOM05D002912 ORTHO05D003191 3.2e-07 60.5 90 40.0
Sopen09g001840 Solanum pennellii HOM05D002912 ORTHO05D003191 3.2e-07 60.5 41 63.4
HanXRQChr08g0219481 Helianthus annuus HOM05D002912 ORTHO05D003191 4.2e-07 60.1 41 63.4
Lalb_Chr02g0153381 Lupinus albus HOM05D002912 ORTHO05D003191 4.2e-07 60.1 41 63.4
Oeu029116.1 Olea europaea HOM05D002912 ORTHO05D003191 4.2e-07 60.1 90 41.1
vmacro18962 Vaccinium macrocarpon HOM05D002912 ORTHO05D003191 4.2e-07 60.1 97 38.1
A05p39460 Brassica napus HOM05D002912 ORTHO05D003191 5.5e-07 59.7 59 54.2
BraA05t22727Z Brassica rapa HOM05D002912 ORTHO05D003191 5.5e-07 59.7 59 54.2
Gohir.A01G218600 Gossypium hirsutum HOM05D002912 ORTHO05D003191 5.5e-07 59.7 41 61.0
Gohir.D01G207400 Gossypium hirsutum HOM05D002912 ORTHO05D003191 5.5e-07 59.7 41 61.0
Gorai.002G252500 Gossypium raimondii HOM05D002912 ORTHO05D003191 5.5e-07 59.7 41 61.0
Lalb_Chr01g0019111 Lupinus albus HOM05D002912 ORTHO05D003191 5.5e-07 59.7 35 71.4
Os01g0155600 Oryza sativa ssp. japonica HOM05D002912 ORTHO05D003191 5.5e-07 59.7 41 61.0
Prupe.2G224200 Prunus persica HOM05D002912 ORTHO05D003191 5.5e-07 59.7 40 62.5
QL07p045981 Quercus lobata HOM05D002912 ORTHO05D003191 5.5e-07 59.7 40 65.0
VMungo1383G3127 Vigna mungo HOM05D002912 ORTHO05D003191 5.5e-07 59.7 40 62.5
Ah.10g033180 Amaranthus hybridus HOM05D002912 ORTHO05D003191 7.2e-07 59.3 89 40.4
MELO3C011709.2 Cucumis melo HOM05D002912 ORTHO05D003191 7.2e-07 59.3 90 40.0
CsaV3_5G006510 Cucumis sativus L. HOM05D002912 ORTHO05D003191 7.2e-07 59.3 90 40.0
Dinv31388 Davidia involucrata HOM05D005234 ORTHO05D006583 7.2e-07 59.3 40 65.0
FAN06G4140 Fragaria x ananassa HOM05D005234 ORTHO05D006583 7.2e-07 59.3 37 62.2
FAN06G4823 Fragaria x ananassa HOM05D005234 ORTHO05D006583 7.2e-07 59.3 37 62.2
FAN10G0581 Fragaria x ananassa HOM05D005234 ORTHO05D006583 7.2e-07 59.3 37 62.2
Sed0017014 Sechium edule HOM05D002912 ORTHO05D003191 7.2e-07 59.3 97 39.2
Sed0025451 Sechium edule HOM05D002912 ORTHO05D003191 7.2e-07 59.3 90 40.0
THA.LOC104823247 Tarenaya hassleriana HOM05D002912 ORTHO05D003191 7.2e-07 59.3 89 39.3
C05p58480 Brassica napus HOM05D002912 ORTHO05D003191 9.4e-07 58.9 59 54.2
Cfa001562 Carpinus fangiana HOM05D002912 ORTHO05D003191 9.4e-07 58.9 40 62.5
DCAR_005061 Daucus carota HOM05D002912 ORTHO05D003191 9.4e-07 58.9 40 67.5
Glyma.03G175400 Glycine max HOM05D002912 ORTHO05D003191 9.4e-07 58.9 40 62.5
Glyma.19G176100 Glycine max HOM05D002912 ORTHO05D003191 9.4e-07 58.9 40 62.5
Hma1.2p1_0348F.1_g131720 Hydrangea macrophylla HOM05D002912 ORTHO05D003191 9.4e-07 58.9 41 63.4
Zm00001eb282350 Zea mays HOM05D002912 ORTHO05D003191 9.4e-07 58.9 40 60.0
DCAR_017750 Daucus carota HOM05D002912 ORTHO05D003191 1.2e-06 58.5 286 33.6
FvH4_7g20711 Fragaria vesca HOM05D002912 ORTHO05D003191 1.2e-06 58.5 40 60.0
Glyma.03G175600 Glycine max HOM05D002912 ORTHO05D003191 1.2e-06 58.5 40 62.5
Glyma.19G176200 Glycine max HOM05D002912 ORTHO05D003191 1.2e-06 58.5 40 62.5
RcHm_v2.0_Chr1g0364971 Rosa chinensis HOM05D002912 ORTHO05D003191 1.2e-06 58.5 40 60.0
Zm00001eb265810 Zea mays HOM05D002912 ORTHO05D003191 1.2e-06 58.5 41 61.0
A03p00880 Brassica napus HOM05D002912 ORTHO05D003191 1.6e-06 58.2 40 65.0
C03p01130 Brassica napus HOM05D002912 ORTHO05D003191 1.6e-06 58.2 40 65.0
BolC3t12672H Brassica oleracea HOM05D002912 ORTHO05D003191 1.6e-06 58.2 40 65.0
BraA03t09470Z Brassica rapa HOM05D002912 ORTHO05D003191 1.6e-06 58.2 40 65.0
FAN03G0311 Fragaria x ananassa HOM05D002912 ORTHO05D003191 1.6e-06 58.2 33 69.7
THA.LOC104806511 Tarenaya hassleriana HOM05D002912 ORTHO05D003191 1.6e-06 58.2 89 39.3
unitig_8.g4100 Utricularia gibba HOM05D002912 ORTHO05D003191 1.6e-06 58.2 45 60.0
CARHR132250 Cardamine hirsuta HOM05D002912 ORTHO05D003191 2.1e-06 57.8 89 39.3
Eucgr.G02779 Eucalyptus grandis HOM05D002912 ORTHO05D003191 2.1e-06 57.8 41 58.5
Thhalv10017989m.g Eutrema salsugineum HOM05D002912 ORTHO05D003191 2.1e-06 57.8 89 39.3
Sp4g19660 Schrenkiella parvula HOM05D002912 ORTHO05D003191 2.1e-06 57.8 89 39.3
Zm00001eb355350 Zea mays HOM05D002912 ORTHO05D003191 2.1e-06 57.8 41 61.0
CSS0023495 Camellia sinensis var. sinensis HOM05D002912 ORTHO05D003191 2.7e-06 57.4 40 65.0
CSS0037078 Camellia sinensis var. sinensis HOM05D002912 ORTHO05D003191 2.7e-06 57.4 40 65.0
CANSAT80G2852 Cannabis sativa HOM05D002912 ORTHO05D003191 2.7e-06 57.4 295 40.3
HPP92_019806 Vanilla planifolia HOM05D002912 ORTHO05D003191 2.7e-06 57.4 40 62.5
FvH4_6g14771 Fragaria vesca HOM05D002912 ORTHO05D003191 3.6e-06 57.0 40 60.0
FAN02G0443 Fragaria x ananassa HOM05D002912 ORTHO05D003191 3.6e-06 57.0 40 60.0
FAN14G4110 Fragaria x ananassa HOM05D002912 ORTHO05D003191 3.6e-06 57.0 40 60.0
Os03g0285900 Oryza sativa ssp. japonica HOM05D002912 ORTHO05D003191 3.6e-06 57.0 41 61.0
Phvul.001G172600 Phaseolus vulgaris HOM05D002912 ORTHO05D003191 3.6e-06 57.0 40 60.0
RcHm_v2.0_Chr3g0468001 Rosa chinensis HOM05D002912 ORTHO05D003191 3.6e-06 57.0 40 60.0
SEGI_01157 Sequoiadendron giganteum HOM05D002912 ORTHO05D003191 3.6e-06 57.0 40 65.0
AagrBONN_evm.TU.Sc2ySwM_362.2873 Anthoceros agrestis HOM05D002912 ORTHO05D003191 4.7e-06 56.6 39 61.5
AL5G34420 Arabidopsis lyrata HOM05D002912 ORTHO05D003191 4.7e-06 56.6 89 39.3
AT3G53500 Arabidopsis thaliana HOM05D002912 ORTHO05D003191 4.7e-06 56.6 89 39.3
A09p46490 Brassica napus HOM05D002912 ORTHO05D003191 4.7e-06 56.6 89 39.3
C08p28840 Brassica napus HOM05D002912 ORTHO05D003191 4.7e-06 56.6 89 39.3
BolC8t50486H Brassica oleracea HOM05D002912 ORTHO05D003191 4.7e-06 56.6 89 39.3
BraA09t40114Z Brassica rapa HOM05D002912 ORTHO05D003191 4.7e-06 56.6 89 39.3
Carub.0005s2007 Capsella rubella HOM05D002912 ORTHO05D003191 4.7e-06 56.6 89 39.3
CARHR163400 Cardamine hirsuta HOM05D002912 ORTHO05D003191 4.7e-06 56.6 89 39.3
Glyma.08G074602 Glycine max HOM05D002912 ORTHO05D003191 4.7e-06 56.6 38 65.8
Sp5g08840 Schrenkiella parvula HOM05D002912 ORTHO05D003191 4.7e-06 56.6 89 39.3
Aa31LG5G22680 Aethionema arabicum HOM05D002912 ORTHO05D003191 6.1e-06 56.2 89 38.2
Lj1C929T9 Lonicera japonica HOM05D002912 ORTHO05D003191 6.1e-06 56.2 40 60.0
CiPaw.09G185800 Carya illinoinensis HOM05D002912 ORTHO05D003191 8.0e-06 55.8 291 44.3
AUR62025542 Chenopodium quinoa HOM05D002912 ORTHO05D003191 8.0e-06 55.8 40 60.0


User provided reference genes

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