Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19388 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 0.0e+00 2640.1 1331 100.0
Actinidia19322 Actinidia chinensis HOM05D001734 ORTHO05D003483 0.0e+00 1711.4 1386 67.3
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 0.0e+00 1598.2 1385 62.3
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 0.0e+00 1421.4 1378 56.7
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 0.0e+00 1390.2 1386 54.2
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 0.0e+00 1369.8 1470 52.1
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 0.0e+00 1355.1 1375 54.0
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 0.0e+00 1348.6 1334 55.1
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 0.0e+00 1342.8 1384 52.8
Rhsim08G0172200 Rhododendron simsii HOM05D001734 ORTHO05D003483 0.0e+00 1333.5 871 80.3
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 0.0e+00 1325.1 1376 53.3
Haze_07473 Corylus avellana HOM05D001734 ORTHO05D003483 0.0e+00 1318.1 1437 51.6
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 0.0e+00 1318.1 1382 51.3
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 0.0e+00 1303.9 1377 53.0
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 0.0e+00 1294.6 1382 51.7
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 0.0e+00 1291.9 1377 51.3
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 0.0e+00 1291.9 1382 52.4
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 0.0e+00 1290.0 1400 52.3
Gohir.D09G167401 Gossypium hirsutum HOM05D001734 ORTHO05D003483 0.0e+00 1288.9 1377 51.3
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 0.0e+00 1269.2 1429 49.5
Ciclev10018427m.g Citrus clementina HOM05D001734 ORTHO05D003483 0.0e+00 1268.1 1283 54.0
Sabra15G0101700 Salix brachista HOM05D001734 ORTHO05D003483 0.0e+00 1263.8 1495 47.4
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 0.0e+00 1262.7 1368 51.2
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 0.0e+00 1262.7 1374 51.5
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 0.0e+00 1254.6 1403 50.5
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 0.0e+00 1251.9 1386 50.5
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 0.0e+00 1235.7 1392 51.0
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 0.0e+00 1235.3 1385 49.9
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 0.0e+00 1233.4 1382 50.4
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 0.0e+00 1224.5 1379 49.6
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 0.0e+00 1224.5 1382 50.1
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 0.0e+00 1222.6 1401 50.0
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 0.0e+00 1221.5 1381 49.1
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 0.0e+00 1214.9 1384 48.9
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 0.0e+00 1200.3 1391 49.2
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 0.0e+00 1200.3 1381 49.1
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 0.0e+00 1198.7 1374 48.6
Lalb_Chr08g0236501 Lupinus albus HOM05D001734 ORTHO05D003483 0.0e+00 1190.6 1385 48.9
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 0.0e+00 1188.7 1385 48.2
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 0.0e+00 1188.7 1381 48.7
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 0.0e+00 1186.4 1379 48.8
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 0.0e+00 1182.2 1387 48.7
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 0.0e+00 1178.3 1377 48.3
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 0.0e+00 1166.8 1376 48.2
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 0.0e+00 1161.7 1385 48.5
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 0.0e+00 1154.4 1382 47.3
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 0.0e+00 1140.6 1384 47.6
Nitab4.5_0000785g0010 Nicotiana tabacum HOM05D001734 ORTHO05D003483 0.0e+00 1136.7 1295 50.3
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 0.0e+00 1122.8 1379 46.5
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 0.0e+00 1106.3 1376 46.7
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 0.0e+00 1098.2 1379 46.6
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 0.0e+00 1095.5 1397 45.5
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 0.0e+00 1090.5 1375 47.0
CSS0012833 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 0.0e+00 1086.2 780 72.1
Sp5g13840 Schrenkiella parvula HOM05D001734 ORTHO05D003483 0.0e+00 1077.4 1373 45.8
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 6.4e-311 1071.2 1328 48.2
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 1.7e-308 1063.1 1363 45.3
Cc04_g14140 Coffea canephora HOM05D001734 ORTHO05D003483 3.5e-306 1055.4 1089 52.4
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 1.8e-305 1053.1 1417 44.0
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 8.7e-305 1050.8 1376 44.8
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 1.1e-302 1043.9 1377 44.1
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 3.1e-302 1042.3 1374 44.3
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 9.0e-302 1040.8 1399 44.1
CAN.G1305.19 Capsicum annuum HOM05D001734 ORTHO05D003483 1.5e-301 1040.0 1201 49.3
AL5G27530 Arabidopsis lyrata HOM05D001734 ORTHO05D003483 4.5e-301 1038.5 1382 44.6
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 8.4e-300 1034.2 1430 43.3
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 1.9e-299 1033.1 1411 43.4
FAN05G4580 Fragaria x ananassa HOM05D001734 ORTHO05D003483 3.0e-297 1025.8 1329 46.5
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 9.7e-296 1020.8 1430 43.4
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 2.8e-295 1019.2 1435 43.3
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 5.9e-293 1011.5 1399 42.6
CARHR156920 Cardamine hirsuta HOM05D001734 ORTHO05D003483 6.1e-290 1001.5 1381 43.4
Lj9A448G32 Lonicera japonica HOM05D001734 ORTHO05D003483 3.7e-287 992.3 960 56.8
Peaxi162Scf00009g00112 Petunia axillaris HOM05D001734 ORTHO05D003483 1.1e-286 990.7 1108 50.0
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 3.9e-281 972.2 1265 44.7
Nitab4.5_0000984g0090 Nicotiana tabacum HOM05D001734 ORTHO05D003483 8.5e-276 954.5 1514 40.9
ATR0730G231 Amborella trichopoda HOM05D001734 ORTHO05D003483 9.5e-251 871.3 1318 40.8
Rhsim08G0157900 Rhododendron simsii HOM05D001734 ORTHO05D003483 7.8e-245 851.7 1068 51.4
Ca_16176_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 9.8e-232 808.1 958 47.9
TPR.G6035 Trifolium pratense HOM05D001734 ORTHO05D003483 5.1e-228 795.8 1061 44.6
AUR62008208 Chenopodium quinoa HOM05D001734 ORTHO05D003483 3.1e-225 786.6 1139 42.3
Os01g0106700 Oryza sativa ssp. japonica HOM05D001734 ORTHO05D003483 8.6e-220 768.5 1380 35.4
Zm00001eb126710 Zea mays HOM05D001734 ORTHO05D003483 1.1e-211 741.5 1397 34.2
AUR62030960 Chenopodium quinoa HOM05D001734 ORTHO05D003483 1.5e-211 741.1 1139 40.6
CDE07G1059 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 1.2e-210 738.0 1384 36.3
TAR629G1256 Trochodendron aralioides HOM05D001734 ORTHO05D003483 1.1e-193 681.8 680 54.1
arahy.Tifrunner.gnm1.ann1.0L1HI6 Arachis hypogaea HOM05D001734 ORTHO05D003483 1.1e-161 575.5 683 47.3
Pp3c2_23700 Physcomitrium patens HOM05D001734 ORTHO05D003483 2.2e-151 541.2 1418 29.6
VMungo1309G1151 Vigna mungo HOM05D001734 ORTHO05D003483 2.1e-149 534.6 634 47.0
Psat5g114800 Pisum sativum HOM05D001734 ORTHO05D003483 6.1e-149 533.1 624 47.9
unitig_0.g1441 Utricularia gibba HOM05D001734 ORTHO05D003483 1.4e-145 521.9 803 39.1
Hma1.2p1_0701F.1_g205860 Hydrangea macrophylla HOM05D001734 ORTHO05D003483 7.5e-139 499.6 525 53.9
Mapoly0081s0051 Marchantia polymorpha HOM05D001734 ORTHO05D003483 5.9e-136 490.0 1442 27.1
VMungo1309G2093 Vigna mungo HOM05D001734 ORTHO05D003483 1.4e-121 442.2 628 42.4
Solyc03g112950.4 Solanum lycopersicum HOM05D001734 ORTHO05D003483 5.4e-121 440.3 484 51.4
AagrBONN_evm.TU.Sc2ySwM_117.1596 Anthoceros agrestis HOM05D001734 ORTHO05D003483 8.6e-119 433.0 1436 27.5
HPP92_004845 Vanilla planifolia HOM05D002152 ORTHO05D003483 9.5e-118 429.5 789 36.4
HPP92_004868 Vanilla planifolia HOM05D001734 ORTHO05D003483 3.8e-98 364.4 522 39.3
Cpa.g.sc76.53 Carica papaya HOM05D001734 ORTHO05D003483 2.1e-85 322.0 372 48.9
CBR_g290 Chara braunii HOM05D001734 ORTHO05D003483 9.3e-73 280.0 588 29.8
SEGI_29837 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 3.4e-67 261.5 393 36.4
Hund02744 Selenicereus undatus HOM05D001734 ORTHO05D003483 2.2e-66 258.8 313 45.7
TPR.G29226 Trifolium pratense HOM05D001734 ORTHO05D003483 6.3e-53 214.2 178 61.8
FAN20G1174 Fragaria x ananassa HOM05D001734 ORTHO05D003483 1.2e-51 209.9 210 55.2
FAN20G1266 Fragaria x ananassa HOM05D001734 ORTHO05D003483 1.9e-49 202.6 210 54.3
Cpa.g.sc76.49 Carica papaya HOM05D001734 ORTHO05D003483 2.1e-48 199.1 266 45.5
SHI17001 Sapria himalayana HOM05D001734 ORTHO05D003483 6.1e-48 197.6 170 58.8
QL01p024072 Quercus lobata HOM05D001734 ORTHO05D020518 3.9e-47 194.9 716 26.4
Lj9A448G34 Lonicera japonica HOM05D001734 ORTHO05D003483 1.1e-44 186.8 177 59.3
TPR.G6034 Trifolium pratense HOM05D001734 ORTHO05D003483 1.5e-41 176.4 196 51.5
CSS0037969 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 1.0e-39 170.2 107 77.6
CSS0000775 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D033929 1.8e-39 169.5 104 77.9
TAR629G2960 Trochodendron aralioides HOM05D001734 ORTHO05D003483 2.3e-39 169.1 157 54.8
SEGI_30734 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 7.5e-38 164.1 127 59.1
SEGI_22749 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 2.2e-37 162.5 171 47.4
Peaxi162Scf00009g00114 Petunia axillaris HOM05D001734 ORTHO05D003483 1.4e-36 159.8 206 47.6
Rhsim02G0102600 Rhododendron simsii HOM05D001734 ORTHO05D003483 1.9e-33 149.4 168 49.4
BcaNung06699 Brassica carinata HOM05D001734 ORTHO05D003483 3.6e-32 145.2 205 42.4
CSS0041674 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D033929 1.3e-26 126.7 110 61.8
SHI17004 Sapria himalayana HOM05D001734 ORTHO05D020992 1.7e-26 126.3 86 66.3
QL07p004594 Quercus lobata HOM05D001734 ORTHO05D020518 2.5e-25 122.5 185 40.5
Gohir.A09G171650 Gossypium hirsutum HOM05D001734 ORTHO05D003483 1.6e-24 119.8 105 55.2
TPR.G29227 Trifolium pratense HOM05D001734 ORTHO05D003483 2.0e-22 112.8 121 52.9
SHI17002 Sapria himalayana HOM05D001734 ORTHO05D003483 1.1e-20 107.1 205 36.1
SHI17005 Sapria himalayana HOM05D001734 ORTHO05D003483 2.0e-19 102.8 231 30.7
Ca_05696_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 2.7e-19 102.4 185 36.2
CAN.G1305.20 Capsicum annuum HOM05D001734 ORTHO05D003483 1.7e-18 99.8 87 56.3
CBR_g292 Chara braunii HOM05D001734 ORTHO05D003483 7.3e-17 94.4 233 27.5
SHI17003 Sapria himalayana HOM05D001734 ORTHO05D003483 9.5e-17 94.0 89 58.4
SHI17006 Sapria himalayana HOM05D001734 ORTHO05D020518 4.7e-16 91.7 141 38.3
CAN.G853.42 Capsicum annuum HOM05D001734 ORTHO05D003483 6.1e-16 91.3 155 36.8
FAN05G0227 Fragaria x ananassa HOM05D001734 ORTHO05D003483 2.6e-14 85.9 51 74.5
QL07p004610 Quercus lobata HOM05D001734 ORTHO05D020518 1.7e-13 83.2 119 45.4
BraA06t25687Z Brassica rapa HOM05D001734 ORTHO05D003483 2.2e-13 82.8 112 41.1
Sopen12g024730 Solanum pennellii HOM05D035692 ORTHO05D020992 3.7e-13 82.0 64 59.4
QL07p004626 Quercus lobata HOM05D001734 ORTHO05D003483 3.2e-12 79.0 64 67.2
CSS0043056 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 3.5e-11 75.5 51 74.5
Lsat_1_v5_gn_6_39261 Lactuca sativa HOM05D001734 ORTHO05D020518 6.2e-08 64.7 54 55.6
Solyc07g150133.1 Solanum lycopersicum HOM05D001734 ORTHO05D020992 5.2e-07 61.6 55 49.1
QL01p024955 Quercus lobata HOM05D001734 ORTHO05D020518 6.8e-07 61.2 61 50.8
SHI17000 Sapria himalayana HOM05D001734 ORTHO05D033929 8.9e-07 60.8 75 45.3
Cpa.g.sc76.48 Carica papaya HOM05D001734 ORTHO05D120772 1.2e-06 60.5 59 47.5


User provided reference genes

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