Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 0.0e+00 1807.0 918 100.0
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 0.0e+00 1109.7 702 83.0
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 0.0e+00 1107.0 684 85.1
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.6e-310 1068.1 685 82.3
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 4.0e-309 1064.7 693 82.4
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 5.8e-308 1060.8 684 79.7
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 8.7e-304 1047.0 683 80.4
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 1.5e-303 1046.2 675 81.2
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 3.3e-303 1045.0 687 80.9
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 3.6e-302 1041.6 684 81.4
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 6.2e-302 1040.8 695 79.3
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 1.8e-301 1039.3 683 81.0
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 2.0e-300 1035.8 690 80.6
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 5.8e-300 1034.2 740 74.7
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 6.4e-299 1030.8 684 79.8
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 1.9e-298 1029.2 688 79.8
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 1.2e-297 1026.5 696 77.4
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 4.6e-297 1024.6 747 75.4
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 3.0e-296 1021.9 684 79.4
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 6.7e-296 1020.8 684 79.1
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 7.4e-295 1017.3 681 80.5
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 6.2e-294 1014.2 684 79.1
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 1.5e-292 1009.6 684 78.8
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 5.8e-292 1007.7 708 75.1
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 2.2e-291 1005.7 685 77.2
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 1.1e-290 1003.4 684 78.7
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 3.2e-290 1001.9 704 76.0
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 7.1e-290 1000.7 684 78.5
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.3e-288 996.5 654 80.7
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.3e-288 996.5 663 80.2
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 9.6e-287 990.3 702 76.4
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 2.1e-286 989.2 691 76.3
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 3.7e-286 988.4 676 77.7
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 8.2e-286 987.3 679 76.9
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 1.1e-285 986.9 684 76.5
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 1.4e-285 986.5 685 75.0
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 9.0e-285 983.8 670 78.2
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 1.3e-283 979.9 685 77.1
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 2.9e-283 978.8 683 76.3
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 1.4e-282 976.5 683 76.4
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 7.1e-282 974.2 690 75.2
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 2.7e-281 972.2 728 71.6
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 4.6e-281 971.5 663 77.4
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 7.9e-281 970.7 668 77.7
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 1.8e-280 969.5 677 77.7
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.8e-280 969.5 677 77.7
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 5.1e-280 968.0 687 76.1
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 1.1e-279 966.8 691 76.4
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 1.1e-279 966.8 684 75.7
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 4.3e-279 964.9 629 80.4
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 9.7e-279 963.8 665 76.2
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 2.8e-278 962.2 757 71.1
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 2.8e-278 962.2 684 75.4
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 8.2e-278 960.7 679 75.7
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 1.4e-277 959.9 679 75.4
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 1.8e-277 959.5 683 73.9
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 6.9e-277 957.6 665 76.7
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 6.9e-277 957.6 684 74.6
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 9.0e-277 957.2 662 76.9
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 1.5e-276 956.4 686 75.4
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 2.0e-276 956.1 677 74.4
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 2.0e-276 956.1 683 74.5
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 1.0e-275 953.7 684 75.1
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 1.3e-275 953.4 638 81.0
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 1.7e-275 953.0 665 76.4
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 2.2e-275 952.6 665 76.4
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 6.5e-275 951.0 685 73.6
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 1.1e-274 950.3 716 72.2
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 2.1e-273 946.0 684 73.7
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 6.1e-273 944.5 650 77.5
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 6.1e-273 944.5 637 77.1
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.4e-272 943.3 677 76.1
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 6.7e-272 941.0 585 82.1
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 4.3e-271 938.3 682 74.6
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 6.9e-269 931.0 668 74.4
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 6.9e-269 931.0 670 76.1
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 6.9e-269 931.0 639 78.6
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 1.2e-268 930.2 670 74.2
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 7.7e-268 927.5 690 74.9
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 4.2e-266 921.8 678 72.6
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 4.7e-265 918.3 688 71.4
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.4e-264 916.8 505 88.7
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 3.0e-264 915.6 664 73.0
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 8.2e-262 907.5 676 71.6
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.8e-261 906.4 504 86.3
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.0e-256 890.6 687 72.8
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 2.0e-255 886.3 688 67.3
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.6e-252 875.9 664 73.2
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 2.6e-252 875.9 682 68.2
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.0e-251 874.0 689 67.3
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 2.5e-242 842.8 480 85.0
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.2e-236 823.9 766 60.7
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 1.0e-235 820.8 682 67.6
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.4e-232 810.4 691 63.7
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.8e-232 810.1 551 78.9
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 8.6e-227 791.2 640 70.0
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 2.1e-212 743.4 625 63.4
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 4.6e-212 742.3 696 59.6
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 1.1e-208 731.1 676 57.8
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 1.9e-202 710.3 502 67.9
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.5e-194 684.1 410 81.0
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 8.4e-190 668.3 698 59.5
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 3.6e-185 652.9 346 90.2
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.8e-176 624.0 552 56.2
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 1.8e-168 597.4 473 60.3
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 9.0e-168 595.1 477 60.4
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 5.8e-167 592.4 499 68.9
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 9.3e-165 585.1 510 67.1
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 5.3e-160 569.3 367 76.0
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 5.2e-131 473.0 511 48.9
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 3.1e-128 463.8 498 54.6
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 4.9e-121 439.9 567 44.4
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.3e-117 427.2 263 76.4
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 2.3e-110 404.4 533 45.0
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 4.1e-104 383.6 337 69.1
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 8.6e-102 375.9 215 85.6
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 2.6e-98 364.4 520 38.1
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 3.6e-92 344.0 179 91.6
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 1.3e-86 325.5 263 67.3
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 6.0e-71 273.5 169 76.3
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 2.2e-65 255.0 315 56.5
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.5e-56 224.9 180 63.3
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 9.3e-48 196.4 268 49.3
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 8.7e-46 189.9 255 54.5
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 3.3e-45 188.0 254 54.3
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 4.3e-45 187.6 98 89.8
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 8.5e-33 146.7 95 78.9
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 4.4e-29 134.4 247 42.9
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.1e-24 119.8 78 80.8
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 1.4e-19 102.8 174 52.3
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 1.3e-17 96.3 129 48.8
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.3e-14 85.5 123 57.7
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 5.2e-14 84.3 105 64.8
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.0e-13 82.4 210 37.6
vmacro06073 Vaccinium macrocarpon HOM05D000331 ORTHO05D021523 1.4e-11 76.3 59 67.8
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 7.0e-11 73.9 177 38.4
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.3e-09 69.7 177 37.3
vmacro15447 Vaccinium macrocarpon HOM05D000455 ORTHO05D010375 1.1e-08 66.6 112 43.8
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.2e-08 65.1 103 45.6
CSS0024415 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 9.5e-08 63.5 115 38.3
CSS0010178 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 2.8e-07 62.0 121 36.4
Actinidia22184 Actinidia chinensis HOM05D000455 ORTHO05D000434 3.6e-07 61.6 71 49.3
vmacro15456 Vaccinium macrocarpon HOM05D000455 ORTHO05D010375 4.7e-07 61.2 67 52.2
CSS0026143 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 8.0e-07 60.5 121 33.9
vmacro15446 Vaccinium macrocarpon HOM05D000455 ORTHO05D010375 2.3e-06 58.9 67 47.8


User provided reference genes

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