Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 1.1e-206 723.0 364 100.0
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 3.8e-186 654.8 364 90.9
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 8.0e-176 620.5 364 85.2
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 6.3e-165 584.3 380 78.9
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.1e-161 573.5 337 84.6
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.4e-159 566.6 364 77.7
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 8.8e-159 563.9 362 78.5
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 1.4e-156 556.6 364 76.4
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 1.0e-154 550.4 364 74.5
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.5e-153 546.6 364 75.0
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 1.5e-153 546.6 364 75.3
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 1.5e-153 546.6 365 77.0
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.9e-153 546.2 357 76.2
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 2.5e-153 545.8 364 76.1
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 4.2e-153 545.0 363 76.0
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 5.5e-153 544.7 364 75.0
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 7.2e-153 544.3 364 75.0
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 9.5e-153 543.9 364 75.5
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 3.6e-152 542.0 364 75.3
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 6.1e-152 541.2 364 75.0
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 8.0e-152 540.8 364 75.0
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 1.0e-151 540.4 363 76.3
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 1.4e-151 540.0 364 75.8
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 2.3e-151 539.3 374 73.8
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 3.0e-151 538.9 364 72.8
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 4.0e-151 538.5 364 73.9
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 5.2e-151 538.1 364 75.0
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 6.8e-151 537.7 364 75.5
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 8.9e-151 537.3 364 75.3
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.5e-150 536.6 364 75.0
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.5e-150 536.6 364 75.0
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.5e-150 536.6 364 74.7
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 1.5e-150 536.6 364 73.9
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 2.6e-150 535.8 364 73.1
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 2.6e-150 535.8 365 74.0
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 1.3e-149 533.5 364 72.8
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.3e-149 533.5 364 73.4
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.7e-149 533.1 367 73.6
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 2.8e-149 532.3 365 73.4
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 6.3e-149 531.2 364 73.6
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 6.3e-149 531.2 363 74.9
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 1.1e-148 530.4 364 73.4
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 1.1e-148 530.4 367 74.1
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 7.0e-148 527.7 385 69.4
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 7.0e-148 527.7 361 74.2
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 9.2e-148 527.3 361 74.2
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.2e-147 526.9 368 73.4
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.6e-147 526.6 360 73.6
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 5.9e-147 524.6 365 72.6
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 1.0e-146 523.9 365 72.9
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 1.1e-145 520.4 364 72.8
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 9.5e-145 517.3 366 72.7
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 3.6e-144 515.4 364 72.3
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 8.0e-144 514.2 364 72.0
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 1.4e-143 513.5 364 72.0
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.4e-143 513.5 364 72.0
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 2.3e-143 512.7 364 71.7
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 4.0e-143 511.9 364 71.2
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 1.2e-142 510.4 366 71.3
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 1.5e-142 510.0 364 70.9
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 1.5e-142 510.0 365 70.4
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 4.4e-142 508.4 364 70.6
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 7.5e-142 507.7 362 73.2
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 6.4e-141 504.6 364 70.3
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 1.4e-140 503.4 365 70.1
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 3.5e-139 498.8 369 68.8
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 5.0e-138 495.0 365 72.1
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 2.3e-135 486.1 347 70.9
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 2.3e-135 486.1 364 70.6
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 4.0e-135 485.3 365 70.1
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.0e-134 483.0 364 70.3
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 2.6e-134 482.6 364 68.4
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 3.4e-134 482.3 364 67.9
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 1.3e-133 480.3 364 68.4
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 1.7e-133 479.9 307 76.9
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 2.9e-133 479.2 364 67.9
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 8.3e-133 477.6 364 67.6
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.4e-132 476.9 361 69.5
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 2.7e-131 472.6 365 67.7
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 4.6e-131 471.9 367 68.1
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 6.0e-131 471.5 366 67.8
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 7.8e-131 471.1 368 66.3
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 1.3e-130 470.3 364 67.9
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 3.9e-130 468.8 366 67.5
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 8.6e-130 467.6 320 74.4
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.5e-129 466.1 391 62.4
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 3.3e-129 465.7 366 66.7
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 1.2e-128 463.8 365 67.4
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 2.1e-128 463.0 372 66.9
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 6.2e-128 461.5 391 63.7
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 3.4e-126 455.7 277 83.8
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.0e-122 444.1 364 65.1
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 1.7e-122 443.4 364 66.5
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 5.8e-118 428.3 327 67.3
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 1.3e-117 427.2 366 60.9
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 1.3e-117 427.2 379 59.9
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 2.3e-114 416.4 302 70.9
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 2.8e-112 409.5 356 59.0
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 4.8e-112 408.7 357 59.4
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 1.1e-111 407.5 368 60.1
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 1.4e-111 407.1 362 60.2
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 6.4e-109 398.3 341 62.2
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 3.2e-108 396.0 361 59.0
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.0e-107 391.7 378 58.2
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 3.4e-102 375.9 385 50.9
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 7.6e-94 348.2 245 72.7
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 4.2e-92 342.4 308 57.8
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 2.0e-86 323.6 215 76.7
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 1.1e-84 317.8 354 49.2
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 1.0e-82 311.2 277 59.2
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.9e-81 307.0 364 50.5
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 5.7e-81 305.4 371 45.8
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 4.2e-76 289.3 308 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 1.0e-74 284.6 414 41.5
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 5.3e-71 272.3 214 65.0
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 6.7e-66 255.4 173 74.6
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 1.1e-63 248.1 169 73.4
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 1.1e-63 248.1 198 64.6
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.4e-63 247.7 195 63.6
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 5.0e-61 239.2 161 74.5
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 4.4e-57 226.1 168 70.8
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 8.0e-51 205.3 195 56.4
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.8e-50 202.2 122 86.1
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.4e-49 199.5 150 68.7
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.7e-48 197.6 122 84.4
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 4.5e-46 189.5 275 45.1
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 5.9e-46 189.1 309 42.1
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 1.2e-43 181.4 251 44.2
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 2.2e-40 170.6 165 58.2
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.0e-37 161.8 122 73.0
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 1.9e-36 157.5 142 60.6
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 3.6e-35 153.3 178 44.9
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.8e-34 151.0 138 60.9
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 2.9e-29 133.7 114 58.8
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 9.8e-25 118.6 72 83.3
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 7.0e-23 112.5 82 69.5
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.5e-20 104.8 72 72.2
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 2.1e-19 100.9 386 24.9
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 3.1e-18 97.1 77 62.3
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 1.6e-14 84.7 397 25.4
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 5.1e-13 79.7 126 34.1


User provided reference genes

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