Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05630 Vaccinium macrocarpon HOM05D005508 ORTHO05D006882 9.0e-303 1042.7 507 100.0
Rhsim10G0042800 Rhododendron simsii HOM05D005508 ORTHO05D006882 1.9e-231 805.8 507 79.9
CSS0005994 Camellia sinensis var. sinensis HOM05D005508 ORTHO05D006882 1.3e-200 703.4 507 70.2
GSVIVG01032921001 Vitis vinifera HOM05D005508 ORTHO05D006882 1.3e-197 693.3 507 67.5
TAR371G0059 Trochodendron aralioides HOM05D005508 ORTHO05D006882 1.6e-195 686.4 505 66.9
Lj4A336G6 Lonicera japonica HOM05D005508 ORTHO05D006882 7.6e-193 677.6 507 65.9
Nitab4.5_0003841g0090 Nicotiana tabacum HOM05D005508 ORTHO05D006882 3.2e-191 672.2 504 66.9
CAN.G588.15 Capsicum annuum HOM05D005508 ORTHO05D006882 4.6e-190 668.3 505 65.0
PGR083G1795 Punica granatum HOM05D005508 ORTHO05D006882 2.3e-189 666.0 507 64.3
PGSC0003DMG400001452 Solanum tuberosum HOM05D005508 ORTHO05D006882 2.5e-188 662.5 505 64.8
Cc07_g04170 Coffea canephora HOM05D005508 ORTHO05D006882 5.7e-188 661.4 507 64.9
CiPaw.04G056000 Carya illinoinensis HOM05D005508 ORTHO05D006882 3.7e-187 658.7 505 65.0
MSTRG.3354 Avicennia marina HOM05D005508 ORTHO05D006882 6.3e-187 657.9 510 63.7
DCAR_011042 Daucus carota HOM05D005508 ORTHO05D006882 3.1e-186 655.6 507 63.7
Peaxi162Scf00166g00526 Petunia axillaris HOM05D005508 ORTHO05D006882 4.1e-186 655.2 505 64.8
Solyc01g111030.2 Solanum lycopersicum HOM05D005508 ORTHO05D006882 4.1e-186 655.2 514 63.2
PGSC0003DMG400001639 Solanum tuberosum HOM05D005508 ORTHO05D006882 5.3e-186 654.8 505 64.4
Eucgr.I02026 Eucalyptus grandis HOM05D005508 ORTHO05D006882 1.2e-185 653.7 505 64.2
Sopen02g033500 Solanum pennellii HOM05D005508 ORTHO05D006882 2.0e-185 652.9 505 64.2
Dinv34945 Davidia involucrata HOM05D005508 ORTHO05D006882 2.6e-185 652.5 449 71.3
Sed0021649 Sechium edule HOM05D005508 ORTHO05D006882 3.4e-185 652.1 507 62.9
Ciclev10011739m.g Citrus clementina HOM05D005508 ORTHO05D006882 7.7e-185 651.0 504 62.9
QL10p049508 Quercus lobata HOM05D005508 ORTHO05D006882 7.7e-185 651.0 506 63.6
Sopen01g053090 Solanum pennellii HOM05D005508 ORTHO05D006882 7.7e-185 651.0 505 63.6
Thecc.04G094900 Theobroma cacao HOM05D005508 ORTHO05D006882 1.0e-184 650.6 506 63.4
CANSAT64G1484 Cannabis sativa HOM05D005508 ORTHO05D006882 1.7e-184 649.8 507 62.9
Manes.02G054600 Manihot esculenta HOM05D005508 ORTHO05D006882 5.0e-184 648.3 501 63.5
Nitab4.5_0017643g0010 Nicotiana tabacum HOM05D005508 ORTHO05D006882 1.1e-183 647.1 505 64.6
ECA232G0694 Erigeron canadensis HOM05D005508 ORTHO05D006882 4.2e-183 645.2 507 63.9
Nn4g23404 Nelumbo nucifera HOM05D005508 ORTHO05D006882 9.4e-183 644.0 478 67.2
Prupe.3G255400 Prunus persica HOM05D005508 ORTHO05D006882 1.0e-181 640.6 505 61.6
THA.LOC104820997 Tarenaya hassleriana HOM05D005508 ORTHO05D006882 8.8e-181 637.5 501 62.3
PSO017G4331 Papaver somniferum HOM05D005508 ORTHO05D006882 7.4e-180 634.4 495 64.0
SalBow5G5336 Salvia bowleyana HOM05D005508 ORTHO05D006882 7.4e-180 634.4 507 62.7
Gohir.A09G009900 Gossypium hirsutum HOM05D005508 ORTHO05D006882 9.7e-180 634.0 500 62.0
Atru.chr8.461 Acer truncatum HOM05D005508 ORTHO05D006882 8.2e-179 630.9 523 59.5
COL.COLO4_07024 Corchorus olitorius HOM05D005508 ORTHO05D006882 8.2e-179 630.9 500 61.2
PSO478G0705 Papaver somniferum HOM05D005508 ORTHO05D006882 1.4e-178 630.2 495 63.4
Potri.017G093300 Populus trichocarpa HOM05D005508 ORTHO05D006882 1.8e-178 629.8 505 62.0
Gorai.006G010700 Gossypium raimondii HOM05D005508 ORTHO05D006882 2.4e-178 629.4 500 61.6
Gohir.D09G009000 Gossypium hirsutum HOM05D005508 ORTHO05D006882 3.1e-178 629.0 500 61.6
Cpa.g.sc14.169 Carica papaya HOM05D005508 ORTHO05D006882 5.3e-178 628.2 498 61.2
Sabra17G0082300 Salix brachista HOM05D005508 ORTHO05D006882 5.3e-178 628.2 505 62.2
AT5G15550 Arabidopsis thaliana HOM05D005508 ORTHO05D006882 1.5e-177 626.7 507 60.7
Sabra04G0069200 Salix brachista HOM05D005508 ORTHO05D006882 5.9e-177 624.8 517 60.9
Carub.0006s1373 Capsella rubella HOM05D005508 ORTHO05D006882 1.0e-176 624.0 507 59.8
Glyma.05G027800 Glycine max HOM05D005508 ORTHO05D006882 2.2e-176 622.9 500 61.4
Glyma.19G029400 Glycine max HOM05D005508 ORTHO05D006882 2.2e-176 622.9 500 61.6
AL6G26410 Arabidopsis lyrata HOM05D005508 ORTHO05D006882 2.9e-176 622.5 507 60.0
Glyma.13G056900 Glycine max HOM05D005508 ORTHO05D006882 5.0e-176 621.7 504 61.3
Migut.K01277 Erythranthe guttata HOM05D005508 ORTHO05D006882 6.5e-176 621.3 515 60.4
Glyma.01G086000 Glycine max HOM05D005508 ORTHO05D006882 6.5e-176 621.3 504 61.5
MELO3C008857.2 Cucumis melo HOM05D005508 ORTHO05D006882 1.1e-175 620.5 507 61.7
CsaV3_4G011930 Cucumis sativus L. HOM05D005508 ORTHO05D006882 1.1e-175 620.5 505 62.0
Solyc02g088780.4 Solanum lycopersicum HOM05D005508 ORTHO05D006882 4.2e-175 618.6 479 63.7
VMungo0464G0521 Vigna mungo HOM05D005508 ORTHO05D006882 4.2e-175 618.6 503 61.0
Lalb_Chr02g0158951 Lupinus albus HOM05D005508 ORTHO05D006882 7.2e-175 617.8 500 61.8
Cfa007659 Carpinus fangiana HOM05D005508 ORTHO05D006882 9.4e-175 617.5 504 62.3
TWI32G0965 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 9.4e-175 617.5 509 60.7
Ca_04302_v3 Cicer arietinum L. HOM05D005508 ORTHO05D006882 1.6e-174 616.7 501 61.1
Phvul.004G035400 Phaseolus vulgaris HOM05D005508 ORTHO05D006882 3.6e-174 615.5 504 60.7
TPR.G10015 Trifolium pratense HOM05D005508 ORTHO05D006882 3.6e-174 615.5 503 60.0
Oeu007065.1 Olea europaea HOM05D005508 ORTHO05D006882 6.1e-174 614.8 507 60.7
Aqoxy3G02922 Aquilegia oxysepala HOM05D005508 ORTHO05D006882 1.4e-173 613.6 505 59.6
Lj2g0000039 Lotus japonicus HOM05D005508 ORTHO05D006882 1.4e-173 613.6 504 59.3
Lsat_1_v5_gn_4_172421 Lactuca sativa HOM05D005508 ORTHO05D006882 3.0e-173 612.5 505 60.6
Medtr7g099170 Medicago truncatula HOM05D005508 ORTHO05D006882 7.4e-172 607.8 507 59.6
arahy.Tifrunner.gnm1.ann1.6ZV37H Arachis hypogaea HOM05D005508 ORTHO05D006882 2.2e-171 606.3 506 60.7
Psat1g067800 Pisum sativum HOM05D005508 ORTHO05D006882 2.2e-171 606.3 501 59.3
CARHR197750 Cardamine hirsuta HOM05D005508 ORTHO05D006882 4.8e-171 605.1 507 59.2
Lj4C332G1 Lonicera japonica HOM05D005508 ORTHO05D006882 5.3e-170 601.7 507 60.4
Sp6g28530 Schrenkiella parvula HOM05D005508 ORTHO05D006882 1.2e-169 600.5 505 59.4
Haze_14435 Corylus avellana HOM05D005508 ORTHO05D006882 1.5e-169 600.1 513 60.4
MD09G1066100 Malus domestica HOM05D005508 ORTHO05D006882 2.6e-169 599.4 505 59.4
BcaC03g18558 Brassica carinata HOM05D005508 ORTHO05D006882 1.7e-168 596.7 505 58.4
Dinv33825 Davidia involucrata HOM05D005508 ORTHO05D006882 3.8e-168 595.5 477 63.9
arahy.Tifrunner.gnm1.ann1.LP06NS Arachis hypogaea HOM05D005508 ORTHO05D006882 1.9e-167 593.2 506 59.9
BcaB01g05044 Brassica carinata HOM05D005508 ORTHO05D006882 3.2e-167 592.4 499 58.3
Thhalv10013619m.g Eutrema salsugineum HOM05D005508 ORTHO05D006882 5.5e-167 591.7 505 58.4
RcHm_v2.0_Chr2g0165901 Rosa chinensis HOM05D005508 ORTHO05D006882 8.0e-166 587.8 498 60.0
SGA_v2.0_scaffold148G36399 Striga asiatica HOM05D005508 ORTHO05D006882 3.0e-165 585.9 440 64.3
FvH4_6g46921 Fragaria vesca HOM05D005508 ORTHO05D006882 1.1e-164 583.9 498 59.0
Aa31LG3G15780 Aethionema arabicum HOM05D005508 ORTHO05D006882 2.8e-163 579.3 507 56.6
CDE02G3404 Ceratophyllum demersum HOM05D005508 ORTHO05D006882 3.7e-163 578.9 508 57.3
ClCG10G002410 Citrullus lanatus HOM05D005508 ORTHO05D006882 5.3e-162 575.1 505 59.4
Hund05300 Selenicereus undatus HOM05D005508 ORTHO05D006882 5.9e-161 571.6 506 56.5
Os07g0600400 Oryza sativa ssp. japonica HOM05D005508 ORTHO05D006882 1.5e-159 567.0 504 55.2
Zm00001eb326820 Zea mays HOM05D005508 ORTHO05D006882 4.7e-158 562.0 501 54.7
AUR62029195 Chenopodium quinoa HOM05D005508 ORTHO05D006882 2.3e-157 559.7 507 55.4
HanXRQChr17g0551711 Helianthus annuus HOM05D005508 ORTHO05D006882 2.3e-157 559.7 464 61.9
AUR62014947 Chenopodium quinoa HOM05D005508 ORTHO05D006882 9.7e-156 554.3 505 55.2
SalBow1G5707 Salvia bowleyana HOM05D005508 ORTHO05D006882 3.1e-154 549.3 505 56.4
SalBow1G3414 Salvia bowleyana HOM05D005508 ORTHO05D006882 7.0e-154 548.1 505 55.8
FAN02G1587 Fragaria x ananassa HOM05D005508 ORTHO05D010430 5.5e-151 538.5 465 58.3
FAN14G5804 Fragaria x ananassa HOM05D005508 ORTHO05D010430 1.6e-150 537.0 465 58.1
FAN05G2519 Fragaria x ananassa HOM05D005508 ORTHO05D010430 8.0e-150 534.6 497 55.5
ATR0626G324 Amborella trichopoda HOM05D005508 ORTHO05D006882 2.3e-149 533.1 502 54.8
C02p07790 Brassica napus HOM05D005508 ORTHO05D006882 4.1e-146 522.3 421 61.3
Lsat_1_v5_gn_5_138080 Lactuca sativa HOM05D005508 ORTHO05D006882 7.7e-145 518.1 476 56.5
MD17G1058800 Malus domestica HOM05D005508 ORTHO05D006882 1.2e-140 504.2 557 49.6
Ah.10g032240 Amaranthus hybridus HOM05D005508 ORTHO05D006882 7.5e-140 501.5 545 49.0
unitig_747.g21846 Utricularia gibba HOM05D005508 ORTHO05D006882 2.4e-138 496.5 483 51.8
EL10Ac2g03136 Beta vulgaris HOM05D005508 ORTHO05D006882 5.9e-137 491.9 500 52.0
SEGI_38227 Sequoiadendron giganteum HOM05D005508 ORTHO05D006882 1.6e-129 467.2 492 50.0
Duzib187G1075 Durio zibethinus HOM05D005508 ORTHO05D006882 1.0e-128 464.5 500 50.2
Sc10g0004650 Simmondsia chinensis HOM05D005508 ORTHO05D006882 3.0e-128 463.0 422 56.6
SHI01216 Sapria himalayana HOM05D005508 ORTHO05D006882 3.2e-122 443.0 502 48.0
Pp3c23_13260 Physcomitrium patens HOM05D005508 ORTHO05D006882 2.1e-113 413.7 500 45.4
Mapoly0212s0005 Marchantia polymorpha HOM05D005508 ORTHO05D006882 5.1e-112 409.1 491 44.0
SMO172G0157 Selaginella moellendorffii HOM05D005508 ORTHO05D006882 1.4e-106 391.0 488 42.2
AagrBONN_evm.TU.Sc2ySwM_228.2684 Anthoceros agrestis HOM05D005508 ORTHO05D006882 6.9e-101 372.1 547 40.2
Cfa007661 Carpinus fangiana HOM05D005508 ORTHO05D006882 5.6e-95 352.4 310 60.6
TAR622G1292 Trochodendron aralioides HOM05D005508 ORTHO05D006882 4.6e-89 332.8 311 56.3
TPR.G17839 Trifolium pratense HOM05D005508 ORTHO05D006882 5.5e-82 309.3 233 62.7
CBR_g18642 Chara braunii HOM05D005508 ORTHO05D006882 4.1e-77 293.1 478 38.3
TPR.G17852 Trifolium pratense HOM05D005508 ORTHO05D006882 5.3e-69 266.2 268 53.7
HPP92_025853 Vanilla planifolia HOM05D005508 ORTHO05D006882 8.5e-67 258.8 304 48.4
Cre17.g710100 Chlamydomonas reinhardtii HOM05D005508 ORTHO05D006882 7.9e-65 252.3 531 32.8
TAR622G0687 Trochodendron aralioides HOM05D005508 ORTHO05D006882 4.1e-61 240.0 125 83.2
MBI16_g10277_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D030056 8.5e-59 232.3 176 65.3
MCO06G049 Micromonas commoda HOM05D005508 ORTHO05D006882 3.2e-58 230.3 510 30.0
HPP92_025854 Vanilla planifolia HOM05D005508 ORTHO05D006882 9.4e-58 228.8 138 71.0
Lj2g0016184 Lotus japonicus HOM05D005508 ORTHO05D006882 1.3e-54 218.4 365 38.1
PRCOL_00003700 Prasinoderma coloniale HOM05D005508 ORTHO05D006882 2.2e-54 217.6 518 30.1
TWI34G1701 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 4.7e-41 173.3 148 62.8
C09p61540 Brassica napus HOM05D005508 ORTHO05D006882 1.3e-38 165.2 89 78.7
Hund12433 Selenicereus undatus HOM05D005508 ORTHO05D006882 4.8e-38 163.3 91 76.9
BcaC04g18902 Brassica carinata HOM05D000941 ORTHO05D000882 6.1e-25 119.8 85 63.5
BolC9t58917H Brassica oleracea HOM05D005508 ORTHO05D006882 6.1e-25 119.8 85 63.5
AUR62014946 Chenopodium quinoa HOM05D005508 ORTHO05D006882 1.6e-20 105.1 281 31.0
A02p03100 Brassica napus HOM05D005508 ORTHO05D006882 2.8e-17 94.4 51 80.4
C03p08200 Brassica napus HOM05D005508 ORTHO05D006882 1.0e-16 92.4 51 76.5
BraA08t32798Z Brassica rapa HOM05D005508 ORTHO05D006882 5.8e-15 86.7 97 50.5
SHI29392 Sapria himalayana HOM05D005508 ORTHO05D006882 1.9e-13 81.6 76 57.9
Gohir.A10G166950 Gossypium hirsutum HOM05D005508 ORTHO05D006882 4.1e-13 80.5 50 68.0
Gohir.A13G117650 Gossypium hirsutum HOM05D005508 ORTHO05D006882 1.2e-12 79.0 53 62.3
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 1.3e-11 75.5 53 60.4
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 8.6e-11 72.8 46 65.2
Aa31sc174G60 Aethionema arabicum HOM05D000453 ORTHO05D000387 1.5e-10 72.0 258 23.6
Carub.0008s1013 Capsella rubella HOM05D000453 ORTHO05D000387 3.3e-10 70.9 322 21.7
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 1.2e-09 68.9 313 24.0
Pp3c15_21840 Physcomitrium patens HOM05D004386 ORTHO05D005247 2.8e-09 67.8 276 26.8
SHI29386 Sapria himalayana HOM05D005508 ORTHO05D010077 2.8e-09 67.8 70 47.1
AT5G50120 Arabidopsis thaliana HOM05D000453 ORTHO05D000387 1.8e-08 65.1 273 22.0
SHI29385 Sapria himalayana HOM05D005508 ORTHO05D006882 3.1e-08 64.3 107 33.6
Glyma.07G100800 Glycine max HOM05D002288 ORTHO05D002894 1.2e-07 62.4 271 25.1
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 2.6e-07 61.2 36 72.2
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 5.8e-07 60.1 185 28.1
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 5.8e-07 60.1 149 29.5
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 5.8e-07 60.1 236 23.7
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 9.8e-07 59.3 147 30.6
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 1.3e-06 58.9 255 23.1
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 1.7e-06 58.5 146 29.5
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 1.7e-06 58.5 147 29.9
SGA_v2.0_scaffold113G31696 Striga asiatica HOM05D005508 ORTHO05D006882 1.7e-06 58.5 150 29.3
Atru.chr3.237 Acer truncatum HOM05D002634 ORTHO05D003100 2.9e-06 57.8 274 23.4
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 2.9e-06 57.8 272 23.5
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 2.9e-06 57.8 146 28.8
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 2.9e-06 57.8 146 28.8
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 3.7e-06 57.4 185 26.5
Sabra13G0073200 Salix brachista HOM05D004758 ORTHO05D006063 3.7e-06 57.4 164 26.2
Sed0007301 Sechium edule HOM05D002634 ORTHO05D003100 3.7e-06 57.4 280 23.6
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 4.9e-06 57.0 149 29.5
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 4.9e-06 57.0 147 29.9
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 4.9e-06 57.0 147 29.9
PSO675G6008 Papaver somniferum HOM05D003825 ORTHO05D004491 4.9e-06 57.0 190 26.3
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 6.4e-06 56.6 184 28.8
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 6.4e-06 56.6 149 29.5
CiPaw.02G151700 Carya illinoinensis HOM05D001315 ORTHO05D001618 6.4e-06 56.6 102 26.5
Glyma.17G165900 Glycine max HOM05D002634 ORTHO05D003100 6.4e-06 56.6 265 23.8
Nn1g05027 Nelumbo nucifera HOM05D003825 ORTHO05D004491 6.4e-06 56.6 191 27.2
QL06p040017 Quercus lobata HOM05D002634 ORTHO05D003100 6.4e-06 56.6 283 23.7
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 6.4e-06 56.6 147 32.7
Ah.04g151930 Amaranthus hybridus HOM05D004736 ORTHO05D006424 8.3e-06 56.2 130 30.0
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 8.3e-06 56.2 149 29.5
Cre05.g236250 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D141580 8.3e-06 56.2 67 38.8
Migut.B00242 Erythranthe guttata HOM05D003825 ORTHO05D004491 8.3e-06 56.2 190 26.8
TWI31G0251 Tripterygium wilfordii HOM05D003825 ORTHO05D004491 8.3e-06 56.2 191 26.7


User provided reference genes

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