Gene: AT3G18860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G18860
  • Transcript Identifier AT3G18860.1
  • Gene Type Coding gene
  • Location Chr3 : 6501774-6508352 : positive

Gene Family Information

  • ID HOM05D004755
  • #Genes/#Species 155/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G18860.1
  • uniprot Q9LHN3

Descriptions

  • Description transducin family protein / WD-40 repeat family protein
  • Computational description transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), PLAA family ubiquitin binding, PFU (InterPro:IPR015155), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781), PUL (InterPro:IPR013535); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 46725 Blast hits to 23214 proteins in 744 species: Archae - 52; Bacteria - 6212; Metazoa - 17671; Fungi - 11319; Plants - 5941; Viruses - 0; Other Eukaryotes - 5530 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043161
IBA
Gene Ontologyproteasome-mediated ubiquitin-dependent protein catabolic process1
GO:0010992
IBA
Gene Ontologyubiquitin recycling1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043130
IBA
Gene Ontologyubiquitin binding1
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma2
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005829
IDA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR013535 PUL domain
IPR038122 PFU domain superfamily
IPR020472 G-protein beta WD-40 repeat
IPR011989 Armadillo-like helical
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR015155 PLAA family ubiquitin binding domain
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
19.2.4.2.3.2 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).substrate processing.ubiquitin-binding adaptor (UFD3)