Gene: Solyc02g088780.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g088780.4
  • Transcript Identifier Solyc02g088780.4.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 48793044-48798839 : negative

Gene Family Information

  • ID HOM05D005508
  • #Genes/#Species 139/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g088780.4.1
  • uniprot A0A3Q7FX42
  • gene_id Solyc02g088780

Descriptions

  • Description Ribosome biogenesis protein WDR12 homolog (AHRD V3.3 *** A0A2G3D985_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000463
IEA
GOA Databasematuration of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006412
IEA
GOA Databasetranslation
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0000466
IEA
GOA Databasematuration of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0042273
IEA
GOA Databaseribosomal large subunit biogenesis
GO:0015884
IEA
GOA Databasefolic acid transport
GO:0035350
IEA
GOA DatabaseFAD transmembrane transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015230
IBA
GOA DatabaseFAD transmembrane transporter activity
GO:0008517
IBA
GOA Databasefolic acid transmembrane transporter activity
GO:0003735
IEA
GOA Databasestructural constituent of ribosome
GO:0005515
IEA
InterProprotein binding
GO:0043021
IEA
GOA Databaseribonucleoprotein complex binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT5G15550
GO:0005840
IEA
GOA Databaseribosome
GO:0005654
IEA
GOA Databasenucleoplasm
GO:0005634
IEA
GOA Databasenucleus
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005730
IEA
GOA Databasenucleolus
GO:0030687
IEA
GOA Databasepreribosome, large subunit precursor

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR020472 G-protein beta WD-40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR012972 NLE
Mapman id Description
17.1.2.2.1.10.3 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.pre-60S ribosomal subunit nuclear assembly.PES-BOP1-WDR12 (PeBoW) complex.component WDR12