Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 1.4e-254 882.5 460 100.0
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 4.7e-234 814.3 460 92.8
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.6e-221 772.7 460 87.8
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.4e-217 759.6 460 87.0
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.1e-217 758.4 460 87.8
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 2.2e-215 752.3 460 86.1
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 7.1e-214 747.3 460 85.4
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 3.4e-200 701.8 496 77.2
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 3.9e-196 688.3 458 80.3
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 3.7e-194 681.8 459 79.5
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 3.7e-194 681.8 459 80.2
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 1.7e-191 672.9 459 78.9
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 3.8e-191 671.8 459 77.8
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.1e-190 670.2 458 77.7
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.1e-190 670.2 462 77.5
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.4e-190 669.8 458 78.2
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.9e-190 669.5 458 76.6
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 3.2e-190 668.7 462 77.3
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 3.2e-190 668.7 459 78.6
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 2.7e-189 665.6 472 75.0
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 2.3e-188 662.5 455 77.8
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 2.3e-188 662.5 461 77.0
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 3.9e-188 661.8 459 78.2
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.1e-187 660.2 460 75.9
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.6e-187 659.1 459 78.4
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 4.3e-187 658.3 467 77.3
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 7.4e-187 657.5 461 76.6
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 3.7e-186 655.2 465 76.8
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 6.3e-186 654.4 458 76.0
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 9.1e-185 650.6 459 76.9
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 2.2e-183 646.0 460 75.2
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.6e-181 638.6 459 77.3
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 3.6e-181 638.6 461 75.7
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 4.7e-181 638.3 459 75.4
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 7.9e-181 637.5 461 75.3
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 8.2e-178 627.5 460 72.8
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.4e-177 626.7 460 72.8
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.8e-177 626.3 436 76.8
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 3.1e-177 625.5 460 74.1
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 3.1e-177 625.5 456 74.3
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 7.0e-177 624.4 458 74.9
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.6e-176 623.2 460 73.0
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 3.5e-176 622.1 459 72.3
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.7e-175 619.8 458 72.3
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 2.2e-175 619.4 458 74.5
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 1.1e-174 617.1 458 72.9
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.9e-174 616.3 458 74.0
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 2.5e-174 615.9 432 75.7
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 4.2e-174 615.1 459 74.5
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 9.4e-174 614.0 458 72.9
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 2.1e-173 612.8 459 73.4
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 2.7e-173 612.5 425 77.2
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 4.7e-173 611.7 458 72.7
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.0e-172 610.5 460 70.9
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 1.4e-172 610.1 460 73.9
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 1.4e-172 610.1 458 74.0
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 2.3e-172 609.4 430 74.9
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 2.0e-171 606.3 467 72.8
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 7.5e-171 604.4 458 71.6
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 7.5e-171 604.4 460 72.8
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 1.3e-170 603.6 460 73.0
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 4.8e-170 601.7 469 72.1
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 7.7e-168 594.3 422 75.4
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.7e-167 593.2 458 71.8
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 2.2e-167 592.8 459 70.2
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 1.1e-166 590.5 458 71.2
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.5e-166 589.3 470 70.9
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 2.5e-166 589.3 459 70.8
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 3.2e-166 589.0 465 70.8
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 3.6e-165 585.5 459 70.4
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 4.7e-165 585.1 463 71.7
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 6.1e-165 584.7 455 68.8
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.8e-164 583.2 400 77.0
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 6.8e-164 581.3 482 67.8
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.5e-163 580.1 510 66.3
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 1.5e-163 580.1 464 71.1
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 2.0e-163 579.7 463 67.6
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 2.6e-163 579.3 460 69.6
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 3.4e-163 578.9 462 68.8
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 4.4e-163 578.6 479 66.6
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 1.3e-162 577.0 458 70.5
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 1.7e-162 576.6 460 68.5
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 3.7e-162 575.5 458 70.3
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 3.7e-162 575.5 458 67.0
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 7.0e-161 571.2 460 68.9
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 9.1e-161 570.9 459 67.3
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 1.6e-160 570.1 458 66.8
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 2.0e-160 569.7 460 67.4
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 2.9e-159 565.8 458 67.5
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 5.0e-159 565.1 458 67.2
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 1.1e-158 563.9 458 66.8
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 1.9e-158 563.1 461 67.5
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 7.2e-158 561.2 460 68.5
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 8.0e-157 557.8 458 67.2
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 8.0e-157 557.8 458 66.8
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 1.8e-156 556.6 458 67.0
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 5.2e-156 555.1 458 66.6
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 6.8e-156 554.7 458 66.4
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.2e-155 553.9 458 66.4
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 1.5e-155 553.5 458 66.2
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 6.3e-154 548.1 461 65.7
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.4e-153 547.0 460 65.9
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 3.8e-151 538.9 460 64.8
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 5.0e-151 538.5 488 62.1
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 5.0e-151 538.5 461 64.9
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.1e-150 537.3 458 65.1
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 3.3e-150 535.8 481 62.6
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 1.2e-149 533.9 462 64.9
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 2.8e-149 532.7 462 64.7
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 8.9e-148 527.7 465 63.9
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 4.4e-147 525.4 458 63.8
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 3.6e-141 505.8 379 73.1
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 6.2e-141 505.0 434 65.0
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 1.2e-139 500.7 421 66.3
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 3.4e-139 499.2 434 64.7
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 2.4e-137 493.0 421 64.4
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 6.6e-135 485.0 403 65.8
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.5e-134 483.8 508 56.1
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 9.5e-134 481.1 432 62.5
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 6.8e-132 474.9 485 59.4
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 1.7e-127 460.3 397 64.0
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 4.7e-125 452.2 474 55.3
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 8.1e-125 451.4 458 59.4
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 5.6e-118 428.7 350 66.9
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 7.3e-118 428.3 349 67.3
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 4.4e-115 419.1 481 51.1
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 2.1e-109 400.2 508 47.6
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 8.1e-109 398.3 494 52.2
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 1.2e-104 384.4 458 50.2
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 4.6e-104 382.5 504 45.6
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 9.3e-97 358.2 473 49.9
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 8.4e-90 335.1 248 69.4
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 5.5e-89 332.4 412 50.2
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 2.0e-83 313.9 351 54.1
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 2.1e-80 303.9 556 38.3
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 1.3e-79 301.2 362 53.3
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 2.9e-74 283.5 525 37.7
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 4.5e-67 259.6 380 43.4
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.4e-60 238.0 286 50.7
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 4.5e-59 233.0 254 57.5
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 6.3e-53 212.6 399 39.8
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 4.1e-52 209.9 134 80.6
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 2.0e-51 207.6 179 63.7
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 9.4e-49 198.7 183 59.6
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 6.8e-47 192.6 184 58.7
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.5e-46 191.4 395 36.2
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.6e-46 190.7 231 51.1
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 3.1e-44 183.7 178 57.9
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 1.7e-42 177.9 133 77.4
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 2.6e-38 164.1 362 34.0
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 7.5e-38 162.5 265 38.5
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 5.9e-35 152.9 148 54.1
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 1.9e-33 147.9 147 63.9
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 4.4e-30 136.7 160 53.8
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 4.4e-30 136.7 142 57.7
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 4.1e-28 130.2 166 51.8
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 3.3e-25 120.6 115 54.8
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 2.1e-24 117.9 178 43.8
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.1e-23 115.5 83 78.3
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 4.9e-21 106.7 82 64.6
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 6.8e-15 86.3 54 75.9
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 2.6e-14 84.3 206 34.0
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 1.1e-12 79.0 315 24.4
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 7.1e-12 76.3 129 46.5
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 7.1e-12 76.3 63 60.3
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 7.8e-11 72.8 113 41.6
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 1.2e-08 65.5 46 73.9
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 2.8e-08 64.3 42 81.0
Actinidia22797 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.6e-08 63.9 107 43.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.4e-07 61.2 32 93.8
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 3.1e-07 60.8 35 85.7
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 5.2e-07 60.1 40 72.5


User provided reference genes

Program Settings