Gene: Lsat_1_v5_gn_8_147141

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_8_147141
  • Transcript Identifier Lsat_1_v5_gn_8_147141.1
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_8 : 246219447-246223280 : negative

Gene Family Information

  • ID HOM05D004146
  • #Genes/#Species 170/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_8_147141.v5
  • pacid 38955935

Descriptions

  • Description PF00521//PF05499 - DNA gyrase/topoisomerase IV, subunit A (DNA_topoisoIV) // DNA methyltransferase 1-associated protein 1 (DMAP1) (DMAP1)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006265
IEA
InterProDNA topological change
GO:0043967
ISO
PLAZA Homology (enrichment)histone H4 acetylation HOM05D004146
GO:0006281
ISO
PLAZA Homology (enrichment)DNA repair HOM05D004146
GO:0006338
ISO
PLAZA Homology (enrichment)chromatin remodeling HOM05D004146
GO:0043968
ISO
PLAZA Homology (enrichment)histone H2A acetylation HOM05D004146
GO:0045892
ISO
PLAZA Homology (enrichment)negative regulation of transcription, DNA-templated HOM05D004146

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003918
IEA
InterProDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0005524
IEA
InterProATP binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G47210

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G47210
GO:0035267
ISO
PLAZA Integrative OrthologyNuA4 histone acetyltransferase complex AT2G47210
GO:0000812
ISO
PLAZA Integrative OrthologySwr1 complex AT2G47210

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal
IPR013760 DNA topoisomerase, type IIA-like domain superfamily
Mapman id Description
12.3.1.1.5.3 Chromatin organisation.post-translational histone modification.histone acetylation.NuA4 histone acetyltransferase complex.module shared with NuA4/SWR1 complexes.recruitment factor component SWC4
12.4.4.7.3 Chromatin organisation.nucleosome remodeling.SWR1 chromatin remodeling complex.SWR1/NuA4-complexes shared module.recruitment factor component SWC4