Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01746 Vaccinium macrocarpon HOM05D000246 ORTHO05D005396 2.8e-107 392.1 221 100.0
vmacro01744 Vaccinium macrocarpon HOM05D000246 ORTHO05D005396 1.2e-89 333.6 197 87.8
Rhsim11G0127500 Rhododendron simsii HOM05D000246 ORTHO05D005396 6.3e-75 284.6 196 83.7
Actinidia39024 Actinidia chinensis HOM05D000246 ORTHO05D005396 1.8e-50 203.4 212 56.6
CSS0032566 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005396 3.5e-49 199.1 194 59.3
CSS0044641 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005396 3.5e-49 199.1 194 59.3
Haze_01763 Corylus avellana HOM05D000246 ORTHO05D005396 2.3e-45 186.4 195 54.4
Hma1.2p1_2221F.1_g317340 Hydrangea macrophylla HOM05D000246 ORTHO05D005396 4.0e-45 185.7 199 54.3
Atru.chr6.555 Acer truncatum HOM05D000246 ORTHO05D005396 9.8e-44 181.0 193 52.3
Manes.10G122800 Manihot esculenta HOM05D000246 ORTHO05D005396 2.8e-43 179.5 195 50.8
GSVIVG01023325001 Vitis vinifera HOM05D000246 ORTHO05D005396 8.3e-43 177.9 210 51.4
CiPaw.05G049800 Carya illinoinensis HOM05D000246 ORTHO05D005396 1.1e-42 177.6 195 51.8
Ciclev10000077m.g Citrus clementina HOM05D000246 ORTHO05D005396 1.8e-42 176.8 194 52.1
QL02p099436 Quercus lobata HOM05D000246 ORTHO05D005396 9.2e-42 174.5 207 55.6
Cc02_g22770 Coffea canephora HOM05D000246 ORTHO05D005396 1.6e-41 173.7 207 49.8
TAR624G1231 Trochodendron aralioides HOM05D000246 ORTHO05D005396 2.9e-40 169.5 196 53.1
PGR042G0910 Punica granatum HOM05D000246 ORTHO05D005396 3.8e-40 169.1 192 51.6
Hma1.2p1_3213F.1_g334020 Hydrangea macrophylla HOM05D000246 ORTHO05D005396 6.6e-40 168.3 198 49.5
Lj6g0022943 Lotus japonicus HOM05D000246 ORTHO05D005396 4.3e-39 165.6 191 49.7
Nitab4.5_0001744g0020 Nicotiana tabacum HOM05D000246 ORTHO05D005396 5.6e-39 165.2 168 53.6
Sc10g0005930 Simmondsia chinensis HOM05D000246 ORTHO05D005396 1.2e-38 164.1 205 58.0
MSTRG.16508 Avicennia marina HOM05D000246 ORTHO05D005396 1.6e-38 163.7 204 58.3
VMungo0540G2260 Vigna mungo HOM05D000246 ORTHO05D005396 4.7e-38 162.2 193 49.7
Duzib132G0704 Durio zibethinus HOM05D000246 ORTHO05D005396 6.1e-38 161.8 199 49.7
Migut.B00814 Erythranthe guttata HOM05D000246 ORTHO05D005396 1.0e-37 161.0 205 52.7
Medtr2g006440 Medicago truncatula HOM05D000246 ORTHO05D005396 3.0e-37 159.5 192 47.4
TPR.G23583 Trifolium pratense HOM05D000246 ORTHO05D005396 4.0e-37 159.1 192 48.4
Psat1g222120 Pisum sativum HOM05D000246 ORTHO05D005396 5.2e-37 158.7 192 46.9
Nitab4.5_0008546g0020 Nicotiana tabacum HOM05D000246 ORTHO05D005396 6.8e-37 158.3 166 53.0
Phvul.006G216200 Phaseolus vulgaris HOM05D000246 ORTHO05D005396 1.2e-36 157.5 193 49.7
TPR.G2105 Trifolium pratense HOM05D000246 ORTHO05D005396 1.2e-36 157.5 193 49.2
Ca_00062_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005396 1.5e-36 157.1 193 50.3
Nn2g14796 Nelumbo nucifera HOM05D000246 ORTHO05D005396 2.6e-36 156.4 202 49.0
Prupe.4G271400 Prunus persica HOM05D000246 ORTHO05D005396 5.7e-36 155.2 194 46.4
Gohir.D13G034100 Gossypium hirsutum HOM05D000246 ORTHO05D005396 1.3e-35 154.1 194 49.0
MELO3C019447.2 Cucumis melo HOM05D000246 ORTHO05D005396 1.7e-35 153.7 194 46.4
Thecc.02G089200 Theobroma cacao HOM05D000246 ORTHO05D005396 2.2e-35 153.3 195 51.8
Cpa.g.sc31.48 Carica papaya HOM05D000246 ORTHO05D005396 2.9e-35 152.9 192 51.0
CsaV3_3G019190 Cucumis sativus L. HOM05D000246 ORTHO05D005396 3.7e-35 152.5 194 46.4
Sabra03G0008800 Salix brachista HOM05D000246 ORTHO05D005396 4.9e-35 152.1 141 55.3
Sed0017184 Sechium edule HOM05D000246 ORTHO05D005396 4.9e-35 152.1 193 45.1
MBI17_g20812_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005396 1.8e-34 150.2 160 53.8
COL.COLO4_11771 Corchorus olitorius HOM05D000246 ORTHO05D005396 2.4e-34 149.8 163 55.2
Sabra03G0009400 Salix brachista HOM05D000246 ORTHO05D005396 2.4e-34 149.8 141 53.9
Eucgr.G00562 Eucalyptus grandis HOM05D000246 ORTHO05D005396 5.4e-34 148.7 196 47.4
Potri.003G015800 Populus trichocarpa HOM05D000246 ORTHO05D005396 1.2e-33 147.5 176 49.4
Sabra03G0009100 Salix brachista HOM05D000246 ORTHO05D005396 1.2e-33 147.5 178 48.3
Sabra03G0009700 Salix brachista HOM05D000246 ORTHO05D005396 1.2e-33 147.5 178 48.3
Lalb_Chr20g0123591 Lupinus albus HOM05D000246 ORTHO05D005396 1.6e-33 147.1 188 46.3
Solyc01g103960.3 Solanum lycopersicum HOM05D000246 ORTHO05D005396 6.6e-32 141.7 164 46.3
Sopen01g046350 Solanum pennellii HOM05D000246 ORTHO05D005396 6.6e-32 141.7 164 46.3
TWI59G0870 Tripterygium wilfordii HOM05D000246 ORTHO05D005396 6.6e-32 141.7 193 45.1
Aqoxy5G02652 Aquilegia oxysepala HOM05D000246 ORTHO05D005396 1.1e-31 141.0 192 44.8
AUR62011515 Chenopodium quinoa HOM05D000246 ORTHO05D005396 1.6e-30 137.1 196 44.4
EL10Ac9g21897 Beta vulgaris HOM05D000246 ORTHO05D005396 2.8e-30 136.3 208 42.8
AUR62016334 Chenopodium quinoa HOM05D000246 ORTHO05D005396 4.7e-30 135.6 196 44.4
Glyma.08G188100 Glycine max HOM05D000246 ORTHO05D005396 4.7e-30 135.6 191 44.5
MD02G1262900 Malus domestica HOM05D000246 ORTHO05D005396 4.7e-30 135.6 194 40.7
MD07G1057400 Malus domestica HOM05D000246 ORTHO05D005396 4.7e-30 135.6 194 42.8
THA.LOC104809610 Tarenaya hassleriana HOM05D000246 ORTHO05D005396 4.7e-30 135.6 191 46.1
ATR0071G007 Amborella trichopoda HOM05D000246 ORTHO05D005396 6.2e-30 135.2 202 41.6
arahy.Tifrunner.gnm1.ann1.P64QHW Arachis hypogaea HOM05D000246 ORTHO05D005396 8.0e-30 134.8 194 41.2
Glyma.12G170000 Glycine max HOM05D000246 ORTHO05D005396 1.4e-29 134.0 208 42.3
Gorai.013G038600 Gossypium raimondii HOM05D000246 ORTHO05D005396 1.4e-29 134.0 98 70.4
Peaxi162Scf00011g00639 Petunia axillaris HOM05D000246 ORTHO05D005396 2.3e-29 133.3 158 43.0
RcHm_v2.0_Chr7g0221231 Rosa chinensis HOM05D000246 ORTHO05D005396 3.1e-29 132.9 192 42.7
PGSC0003DMG400023802 Solanum tuberosum HOM05D000246 ORTHO05D005396 3.1e-29 132.9 164 45.7
BcaNung06376 Brassica carinata HOM05D000246 ORTHO05D005396 5.2e-29 132.1 154 48.7
Thhalv10006602m.g Eutrema salsugineum HOM05D000246 ORTHO05D005396 5.2e-29 132.1 141 50.4
A09p64760 Brassica napus HOM05D000246 ORTHO05D005396 8.9e-29 131.3 154 48.7
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.2e-28 131.0 134 50.0
C08p48440 Brassica napus HOM05D000246 ORTHO05D005396 1.2e-28 131.0 154 48.7
FvH4_5g28920 Fragaria vesca HOM05D000246 ORTHO05D005396 1.5e-28 130.6 219 41.1
FAN18G0190 Fragaria x ananassa HOM05D000246 ORTHO05D005396 1.5e-28 130.6 219 41.1
Oeu032246.1 Olea europaea HOM05D000246 ORTHO05D005396 1.5e-28 130.6 189 45.0
BolC8t52382H Brassica oleracea HOM05D000246 ORTHO05D005396 2.0e-28 130.2 154 48.1
ECA234G4461 Erigeron canadensis HOM05D000246 ORTHO05D005396 2.6e-28 129.8 145 50.3
Lsat_1_v5_gn_9_121000 Lactuca sativa HOM05D000246 ORTHO05D005396 2.6e-28 129.8 222 41.0
BraA09t41819Z Brassica rapa HOM05D000246 ORTHO05D005396 4.4e-28 129.0 154 48.1
HPP92_004440 Vanilla planifolia HOM05D000246 ORTHO05D005396 5.8e-28 128.6 164 51.8
BcaC07g38599 Brassica carinata HOM05D000246 ORTHO05D005396 9.8e-28 127.9 134 48.5
C08p14030 Brassica napus HOM05D000246 ORTHO05D005396 9.8e-28 127.9 134 48.5
BolC8t49040H Brassica oleracea HOM05D000246 ORTHO05D005396 9.8e-28 127.9 134 48.5
Lsat_1_v5_gn_5_105701 Lactuca sativa HOM05D000246 ORTHO05D005396 9.8e-28 127.9 88 71.6
SGA_v2.0_scaffold110G31337 Striga asiatica HOM05D000246 ORTHO05D005396 1.7e-27 127.1 194 45.9
AL1G21910 Arabidopsis lyrata HOM05D000246 ORTHO05D005396 2.2e-27 126.7 137 48.9
CAN.G798.21 Capsicum annuum HOM05D000246 ORTHO05D005396 2.2e-27 126.7 164 44.5
HanXRQChr10g0298131 Helianthus annuus HOM05D000246 ORTHO05D005396 2.2e-27 126.7 140 50.7
PSO017G1629 Papaver somniferum HOM05D000246 ORTHO05D005396 2.2e-27 126.7 193 42.0
FAN13G0468 Fragaria x ananassa HOM05D000246 ORTHO05D005396 3.7e-27 125.9 219 39.7
CARHR011150 Cardamine hirsuta HOM05D000246 ORTHO05D005396 6.4e-27 125.2 137 48.2
A08p33740 Brassica napus HOM05D000246 ORTHO05D005396 8.3e-27 124.8 185 41.6
BraA08t35290Z Brassica rapa HOM05D000246 ORTHO05D005396 8.3e-27 124.8 185 41.6
Carub.0001s1051 Capsella rubella HOM05D000246 ORTHO05D005396 1.1e-26 124.4 137 48.2
HanXRQChr03g0065231 Helianthus annuus HOM05D000246 ORTHO05D005396 1.1e-26 124.4 231 39.4
AT1G10930 Arabidopsis thaliana HOM05D000246 ORTHO05D005396 1.4e-26 124.0 137 47.4
Sp1g09640 Schrenkiella parvula HOM05D000246 ORTHO05D005396 1.4e-26 124.0 186 44.1
unitig_8.g4526 Utricularia gibba HOM05D000246 ORTHO05D005396 1.9e-26 123.6 186 43.0
DCAR_006693 Daucus carota HOM05D000246 ORTHO05D005396 2.4e-26 123.2 190 49.5
MBI17_g38774_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005396 4.1e-26 122.5 139 50.4
SGA_v2.0_scaffold131G34453 Striga asiatica HOM05D000246 ORTHO05D005396 5.4e-26 122.1 195 43.6
CANSAT11G0299 Cannabis sativa HOM05D000246 ORTHO05D005396 7.0e-26 121.7 192 41.1
arahy.Tifrunner.gnm1.ann1.V2A8TE Arachis hypogaea HOM05D000246 ORTHO05D005396 1.2e-25 120.9 194 39.2
Hund06556 Selenicereus undatus HOM05D000246 ORTHO05D005396 6.6e-24 115.2 197 49.2
Sp2g03660 Schrenkiella parvula HOM05D000246 ORTHO05D005396 5.6e-23 112.1 106 52.8
A09p17030 Brassica napus HOM05D000246 ORTHO05D005396 7.3e-23 111.7 92 56.5
BraA09t37338Z Brassica rapa HOM05D000246 ORTHO05D005396 7.3e-23 111.7 92 56.5
Thhalv10023226m.g Eutrema salsugineum HOM05D000246 ORTHO05D005396 7.3e-23 111.7 90 58.9
Aa31LG1G3940 Aethionema arabicum HOM05D000246 ORTHO05D005396 1.2e-22 110.9 86 60.5
BcaC04g22293 Brassica carinata HOM05D000246 ORTHO05D005396 1.2e-22 110.9 91 56.0
C09p21060 Brassica napus HOM05D000246 ORTHO05D005396 1.2e-22 110.9 91 56.0
BolC9t55007H Brassica oleracea HOM05D000246 ORTHO05D005396 1.2e-22 110.9 91 56.0
CDE04G0206 Ceratophyllum demersum HOM05D000246 ORTHO05D005396 1.2e-22 110.9 89 62.9
BcaB07g31246 Brassica carinata HOM05D000246 ORTHO05D005396 3.6e-22 109.4 92 55.4
CDE08G1044 Ceratophyllum demersum HOM05D000246 ORTHO05D005396 4.7e-22 109.0 183 42.1
arahy.Tifrunner.gnm1.ann1.9F5B0U Arachis hypogaea HOM05D000246 ORTHO05D005396 1.1e-21 107.8 98 52.0
AL7G20370 Arabidopsis lyrata HOM05D000888 ORTHO05D000740 1.4e-21 107.5 89 55.1
FAN04G2409 Fragaria x ananassa HOM05D000246 ORTHO05D005396 2.3e-21 106.7 179 39.1
FAN08G0442 Fragaria x ananassa HOM05D000246 ORTHO05D005396 4.4e-20 102.4 112 48.2
BcaC05g24973 Brassica carinata HOM05D000246 ORTHO05D005396 1.7e-19 100.5 186 37.6
AL2G15560 Arabidopsis lyrata HOM05D000246 ORTHO05D005396 3.7e-19 99.4 99 50.5
Ah.01g020570 Amaranthus hybridus HOM05D000246 ORTHO05D005396 8.3e-19 98.2 193 37.3
Carub.0002s0433 Capsella rubella HOM05D000246 ORTHO05D005396 1.1e-18 97.8 98 51.0
Os04g0433800 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005396 3.2e-18 96.3 190 38.4
SEGI_17577 Sequoiadendron giganteum HOM05D000246 ORTHO05D005396 3.2e-18 96.3 194 35.6
SEGI_22596 Sequoiadendron giganteum HOM05D000246 ORTHO05D005396 3.2e-18 96.3 194 35.6
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 5.4e-18 95.5 89 51.7
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 5.4e-18 95.5 89 51.7
CARHR051950 Cardamine hirsuta HOM05D000246 ORTHO05D005396 9.2e-18 94.7 93 49.5
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 2.7e-17 93.2 89 50.6
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 2.7e-17 93.2 89 50.6
Zm00001eb231860 Zea mays HOM05D000246 ORTHO05D005396 2.7e-17 93.2 194 41.8
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 3.5e-17 92.8 91 50.5
Pp3c2_1760 Physcomitrium patens HOM05D000246 ORTHO05D005396 6.0e-17 92.0 102 47.1
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 1.7e-16 90.5 91 49.5
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 3.0e-16 89.7 79 53.2
Mapoly0070s0053 Marchantia polymorpha HOM05D000246 ORTHO05D005396 2.1e-14 83.6 84 52.4
SMO116G0385 Selaginella moellendorffii HOM05D000246 ORTHO05D005396 4.7e-14 82.4 86 44.2
Lj5C254G15 Lonicera japonica HOM05D000246 ORTHO05D005396 4.0e-13 79.3 96 44.8
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 5.2e-13 79.0 93 50.5
arahy.Tifrunner.gnm1.ann1.J1FRWC Arachis hypogaea HOM05D000246 ORTHO05D005396 4.4e-12 75.9 98 42.9
COL.COLO4_11772 Corchorus olitorius HOM05D000246 ORTHO05D005396 9.9e-12 74.7 98 45.9
CBR_g34731 Chara braunii HOM05D000246 ORTHO05D005396 2.2e-11 73.6 84 45.2
arahy.Tifrunner.gnm1.ann1.4W3SCV Arachis hypogaea HOM05D000246 ORTHO05D015415 2.4e-10 70.1 70 45.7
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 1.3e-08 64.3 51 54.9
BcaC07g42098 Brassica carinata HOM05D004076 ORTHO05D004606 3.9e-08 62.8 85 42.4
Dinv24306 Davidia involucrata HOM05D000246 ORTHO05D005396 5.6e-07 58.9 41 73.2
SHI16634 Sapria himalayana HOM05D000246 ORTHO05D005396 9.6e-07 58.2 41 73.2
arahy.Tifrunner.gnm1.ann1.GBY9UZ Arachis hypogaea HOM05D000246 ORTHO05D005396 1.2e-06 57.8 65 46.2
Gohir.A13G035800 Gossypium hirsutum HOM05D000246 ORTHO05D005396 1.6e-06 57.4 41 73.2


User provided reference genes

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