Gene: Sopen01g046350

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g046350
  • Transcript Identifier Sopen01g046350.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 103049301-103060505 : positive

Gene Family Information

  • ID HOM05D000246
  • #Genes/#Species 1713/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g046350.1

Descriptions

  • Description DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | RECQ4A | FUNCTIONS IN: helicase activity, ATP-dependent 3-5 DNA helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding | INVOLVED IN: chromosome organization, response to DNA damage stimulus, double-strand break repair via homologous recombination | LOCATED IN: intracellular | CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal , RQC domain , DNA helicase, ATP-dependent, RecQ type , DNA helicase, ATP-dependent, RecQ type, N-terminal , DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , Helicase/RNase D C-terminal, HRDC domain | BEST Arabidopsis thaliana protein match is: RECQ helicase L4B
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc01g103960.3
GO:0070417
ISO
PLAZA Integrative Orthologycellular response to cold AT1G10930
GO:0006974
ISO
PLAZA Integrative Orthologycellular response to DNA damage stimulus AT1G10930
GO:0000723
ISO
PLAZA Integrative Orthologytelomere maintenance AT1G10930
GO:0000724
ISO
PLAZA Integrative Orthologydouble-strand break repair via homologous recombination AT1G10930
GO:0071215
ISO
PLAZA Integrative Orthologycellular response to abscisic acid stimulus AT1G10930
GO:0051276
ISO
PLAZA Integrative Orthologychromosome organization AT1G10930
GO:0006310
IEA
InterProDNA recombination
GO:0044237
IEA
InterProcellular metabolic process
GO:0006281
IEA
InterProDNA repair
GO:0006260
IEA
InterProDNA replication

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc01g103960.3
GO:0003676
IEA
InterPronucleic acid binding
GO:0004386
IEA
InterProhelicase activity
GO:0000166
IEA
InterPronucleotide binding
GO:0005524
IEA
InterProATP binding
GO:0043138
IEA
InterPro3'-5' DNA helicase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G10930

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR002121 HRDC domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR018982 RQC domain
IPR011545 DEAD/DEAH box helicase domain
IPR010997 HRDC-like superfamily
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR044876 HRDC domain superfamily
IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain
IPR004589 DNA helicase, ATP-dependent, RecQ type
Mapman id Description
13.3.5.5.3.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.helicase component RecQ4A