Gene: Nitab4.5_0008546g0020
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0008546g0020
- Transcript Identifier Nitab4.5_0008546g0020.1
- Gene Type Coding gene
- Location Nitab4.5_0008546 : 16654-28672 : positive
Gene Family Information
- ID HOM05D000246
- #Genes/#Species 1713/100
- Phylogenetic origin
- ID ORTHO05D005396
- #Genes/#Species 158/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nitab4.5_0008546g0020.1
- SR1-identifier Nta02g30120.1
Descriptions
- Description P-loop containing nucleoside triphosphate hydrolase, Helicase, superfamily 1/2, ATP-binding domain, HRDC domain, DNA/RNA helicase, DEAD/DEAH box type, N-terminal, Helicase, C-terminal, DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site, RQC domain, Winged helix-turn-helix DNA-binding domain, HRDC-like, DNA helicase, ATP-dependent, RecQ type
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc01g103960.3 |
| GO:0070417 | ISO | PLAZA Integrative Orthology | cellular response to cold | AT1G10930 |
| GO:0006974 | ISO | PLAZA Integrative Orthology | cellular response to DNA damage stimulus | AT1G10930 |
| GO:0000723 | ISO | PLAZA Integrative Orthology | telomere maintenance | AT1G10930 |
| GO:0000724 | ISO | PLAZA Integrative Orthology | double-strand break repair via homologous recombination | AT1G10930 |
| GO:0071215 | ISO | PLAZA Integrative Orthology | cellular response to abscisic acid stimulus | AT1G10930 |
| GO:0051276 | ISO | PLAZA Integrative Orthology | chromosome organization | AT1G10930 |
| GO:0044237 | IEA | InterPro | cellular metabolic process | |
| GO:0006310 | IEA | InterPro | DNA recombination | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006260 | IEA | InterPro | DNA replication |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003724 | ISO | PLAZA Integrative Orthology | RNA helicase activity | Solyc01g103960.3 |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0043138 | IEA | InterPro | 3'-5' DNA helicase activity | |
| GO:0005524 | IEA | InterPro | ATP binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT1G10930 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR001650 | Helicase, C-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR018982 | RQC domain |
| IPR002121 | HRDC domain |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR044876 | HRDC domain superfamily |
| IPR004589 | DNA helicase, ATP-dependent, RecQ type |
| IPR032284 | ATP-dependent DNA helicase RecQ, zinc-binding domain |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR010997 | HRDC-like superfamily |
| Mapman id | Description |
|---|---|
| 13.3.5.5.3.1 | Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.helicase component RecQ4A |