Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 0.0e+00 1311.6 667 100.0
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 4.2e-247 858.2 530 84.0
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 4.6e-230 801.6 510 81.2
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 1.8e-229 799.7 498 81.9
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 3.0e-229 798.9 539 77.0
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 7.4e-228 794.3 504 80.6
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.8e-225 784.6 500 81.8
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 1.3e-224 783.5 522 78.4
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 1.4e-223 780.0 532 76.1
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 2.5e-223 779.2 545 74.3
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 3.2e-223 778.9 520 77.1
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 1.0e-221 773.9 525 76.6
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 1.8e-221 773.1 520 77.1
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 3.9e-221 771.9 520 75.8
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 3.3e-220 768.8 508 78.7
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 1.8e-218 763.1 508 77.0
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 2.6e-217 759.2 505 76.6
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 1.3e-216 756.9 503 78.1
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.3e-216 756.9 508 76.8
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 1.7e-216 756.5 500 77.0
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 6.5e-216 754.6 502 76.7
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 6.5e-216 754.6 613 66.9
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.9e-215 753.1 507 76.1
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 7.1e-215 751.1 524 73.9
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 7.1e-215 751.1 526 74.7
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 9.3e-215 750.7 526 74.3
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.1e-214 749.6 572 69.1
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 2.7e-214 749.2 556 69.8
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 3.5e-214 748.8 507 75.5
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 4.6e-214 748.4 502 74.7
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 1.0e-213 747.3 529 72.8
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 1.0e-213 747.3 499 76.8
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 1.8e-213 746.5 534 73.4
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 2.3e-213 746.1 500 77.4
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 3.0e-213 745.7 509 75.4
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 3.9e-213 745.3 515 74.2
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 1.5e-212 743.4 519 75.1
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 5.7e-212 741.5 537 72.1
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 5.7e-212 741.5 572 68.7
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 1.3e-211 740.3 494 77.3
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 2.8e-211 739.2 519 75.0
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 4.8e-211 738.4 508 75.8
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 8.2e-211 737.6 534 70.2
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.1e-210 737.3 556 71.0
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 3.1e-210 735.7 515 74.8
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 3.1e-210 735.7 524 73.3
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 3.1e-210 735.7 502 73.9
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 4.1e-210 735.3 572 68.4
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 4.1e-210 735.3 507 72.6
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 5.3e-210 734.9 508 75.6
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 2.0e-209 733.0 499 75.4
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 2.6e-209 732.6 511 74.2
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 3.4e-209 732.3 508 73.4
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 3.4e-209 732.3 507 71.6
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 7.7e-209 731.1 508 74.8
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 1.7e-208 729.9 541 70.8
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 5.0e-208 728.4 509 74.5
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 5.0e-208 728.4 575 68.3
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 6.5e-208 728.0 504 74.0
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 1.1e-207 727.2 502 74.5
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 1.4e-207 726.9 503 74.8
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 2.5e-207 726.1 526 70.7
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 4.2e-207 725.3 504 74.0
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 1.6e-206 723.4 508 73.8
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 2.1e-206 723.0 511 71.2
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 3.9e-205 718.8 506 74.9
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 8.8e-205 717.6 518 70.8
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 1.3e-203 713.8 507 73.8
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 2.8e-203 712.6 508 71.7
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 3.7e-203 712.2 507 73.6
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 6.3e-203 711.4 508 71.5
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 1.8e-202 709.9 536 70.3
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 5.3e-202 708.4 523 69.8
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 1.2e-198 697.2 507 71.8
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.6e-198 696.8 486 75.1
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 6.1e-198 694.9 503 72.2
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 1.8e-197 693.3 503 72.2
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 2.3e-197 693.0 503 72.6
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 6.7e-197 691.4 513 70.8
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 8.8e-197 691.0 536 67.2
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 2.0e-196 689.9 523 69.8
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 2.6e-196 689.5 523 69.8
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 7.4e-196 688.0 507 71.2
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 1.3e-195 687.2 558 67.6
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 2.2e-195 686.4 523 69.4
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 3.7e-195 685.6 507 70.6
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 4.8e-195 685.3 515 67.8
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 4.8e-195 685.3 516 70.2
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 5.3e-194 681.8 506 69.6
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 9.1e-194 681.0 511 70.1
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 1.7e-192 676.8 503 70.4
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 1.5e-191 673.7 506 70.8
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 3.3e-188 662.5 531 67.2
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 7.5e-188 661.4 452 74.6
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 5.0e-184 648.7 516 64.9
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 1.6e-177 627.1 624 56.9
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 2.9e-176 622.9 572 60.1
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.3e-171 607.4 489 64.6
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 4.3e-167 592.4 478 66.9
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.0e-165 587.8 548 57.5
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 8.9e-165 584.7 394 74.9
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 2.0e-156 557.0 507 58.6
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 2.9e-155 553.1 541 56.4
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.3e-149 533.5 359 77.2
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 3.1e-149 533.1 500 57.2
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.7e-137 493.4 387 70.3
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 2.1e-121 440.7 427 55.5
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 7.1e-106 389.0 261 74.3
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 1.0e-104 385.2 538 43.7
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 4.5e-100 369.8 257 72.0
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 1.8e-80 304.7 280 58.9
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.6e-76 290.8 382 46.9
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.8e-75 287.0 472 41.7
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 2.0e-68 264.6 246 56.5
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 9.4e-66 255.8 168 76.2
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.5e-59 232.6 142 78.2
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 1.1e-58 232.3 158 74.7
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 1.6e-57 228.4 157 73.9
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 2.3e-51 208.0 235 49.8
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 2.5e-50 204.5 132 82.6
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 5.6e-50 203.4 131 81.7
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.3e-46 189.5 168 60.1
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 6.6e-43 179.9 122 73.0
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 2.1e-41 174.9 149 61.7
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 6.4e-38 163.3 99 85.9
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 6.4e-38 163.3 99 85.9
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.6e-36 158.7 309 38.2
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 1.3e-35 155.6 97 79.4
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 1.2e-33 149.1 132 65.9
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 2.0e-31 141.7 198 43.9
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 4.9e-30 137.1 169 50.3
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 5.6e-26 123.6 144 49.3
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 9.9e-23 112.8 82 75.6
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.4e-16 92.4 62 69.4
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 9.9e-15 86.3 83 66.3
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 6.4e-14 83.6 123 41.5
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 1.9e-13 82.0 50 82.0
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 1.8e-08 65.5 59 57.6
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 1.8e-08 65.5 210 27.1
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 1.3e-06 59.3 72 43.1


User provided reference genes

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