Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 0.0e+00 1389.8 705 100.0
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 5.1e-288 994.2 629 82.5
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 9.4e-250 867.1 644 71.3
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 3.4e-223 778.9 650 63.8
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 3.0e-203 712.6 649 58.9
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 4.9e-198 695.3 658 58.4
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 2.7e-196 689.5 651 57.8
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 6.7e-195 684.9 670 56.1
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 3.1e-192 676.0 663 57.0
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.2e-183 647.5 663 55.7
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.5e-183 647.1 650 56.3
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 2.2e-182 643.3 665 54.6
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 4.9e-182 642.1 555 61.4
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 2.1e-180 636.7 698 52.0
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 3.5e-180 636.0 656 55.0
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 2.3e-179 633.3 693 51.7
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 3.0e-179 632.9 659 55.2
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 5.1e-179 632.1 694 51.7
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 6.7e-179 631.7 650 55.1
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 2.5e-178 629.8 694 53.3
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 5.7e-178 628.6 690 51.3
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 9.6e-178 627.9 652 54.9
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 3.7e-177 625.9 697 51.5
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 4.8e-177 625.5 698 51.6
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 6.3e-177 625.2 718 49.0
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 3.1e-176 622.9 709 49.9
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 9.0e-176 621.3 696 50.3
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 1.5e-175 620.5 650 52.9
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 2.6e-175 619.8 650 53.8
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 2.9e-174 616.3 676 52.4
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 5.5e-173 612.1 698 50.6
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 5.5e-173 612.1 710 49.4
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 1.6e-172 610.5 658 51.2
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 6.1e-172 608.6 646 53.4
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 6.7e-171 605.1 636 53.1
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 8.7e-171 604.7 690 50.7
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 3.3e-170 602.8 701 50.2
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 7.4e-170 601.7 695 49.1
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 3.7e-169 599.4 683 51.7
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 5.3e-168 595.5 622 53.4
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 2.6e-167 593.2 697 51.1
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 3.8e-166 589.3 655 51.5
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 2.1e-164 583.6 751 47.3
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.8e-163 580.5 658 51.5
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 5.7e-162 575.5 701 48.8
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 2.4e-160 570.1 674 50.0
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 4.1e-160 569.3 654 49.8
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 2.6e-159 566.6 653 49.6
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 5.9e-159 565.5 688 48.1
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 7.7e-159 565.1 655 49.6
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 7.7e-159 565.1 705 47.4
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 2.2e-158 563.5 682 49.3
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 3.8e-158 562.8 741 45.5
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 8.5e-158 561.6 697 49.4
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 3.2e-157 559.7 698 46.4
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 4.2e-157 559.3 653 49.9
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 7.2e-157 558.5 749 45.0
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 3.6e-156 556.2 701 46.5
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 2.3e-155 553.5 637 51.6
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 5.2e-155 552.4 654 49.8
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 5.2e-155 552.4 635 52.0
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 8.8e-155 551.6 719 45.3
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 1.7e-153 547.4 636 49.5
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 3.7e-153 546.2 693 47.5
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 6.3e-153 545.4 655 49.0
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 7.0e-152 542.0 784 43.4
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 4.5e-151 539.3 635 49.0
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 2.2e-150 537.0 700 45.9
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 1.5e-149 534.3 685 47.2
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.9e-149 533.9 774 43.7
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 7.2e-149 531.9 753 43.0
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 9.4e-149 531.6 634 50.0
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 6.1e-148 528.9 691 46.5
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.4e-147 527.7 691 46.3
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 1.5e-146 524.2 712 43.3
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 1.8e-144 517.3 710 45.4
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 1.0e-142 511.5 636 48.7
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 2.1e-140 503.8 635 47.4
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 1.5e-138 497.7 634 48.6
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 7.5e-138 495.4 655 45.6
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 9.8e-138 495.0 691 45.0
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 2.8e-137 493.4 485 56.9
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 9.1e-136 488.4 601 48.8
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 2.1e-132 477.2 711 41.9
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 1.0e-131 474.9 720 41.9
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 1.4e-131 474.6 649 45.1
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 1.7e-129 467.6 723 40.5
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.7e-129 467.6 634 46.7
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 6.3e-129 465.7 698 41.4
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.2e-127 461.5 743 40.4
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 5.9e-127 459.1 486 51.4
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 2.5e-125 453.8 718 40.0
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 3.5e-119 433.3 638 42.0
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 7.8e-119 432.2 670 41.9
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.5e-117 427.2 660 41.2
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 1.4e-115 421.4 842 35.4
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 3.4e-114 416.8 626 43.5
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 3.1e-107 393.7 803 36.0
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 1.5e-106 391.3 806 34.4
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 7.8e-103 379.0 832 34.5
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 6.6e-102 375.9 831 34.4
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 1.2e-100 371.7 449 49.0
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 2.3e-94 350.9 798 34.8
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 1.2e-92 345.1 720 34.3
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 4.3e-85 320.1 251 64.1
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 3.4e-82 310.5 643 37.6
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 5.6e-77 293.1 653 35.4
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 3.7e-76 290.4 657 34.7
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 4.8e-76 290.0 635 34.6
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 3.1e-75 287.3 655 34.2
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 1.6e-71 275.0 644 34.3
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 3.3e-61 240.7 712 28.1
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 7.6e-58 229.6 202 57.9
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 8.5e-57 226.1 465 37.2
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.3e-52 212.2 267 45.7
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 6.3e-52 209.9 641 29.0
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 8.5e-49 199.5 412 36.2
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 9.7e-45 186.0 871 24.5
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 1.5e-42 178.7 126 67.5
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 5.9e-42 176.8 131 68.7
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 2.0e-37 161.8 623 26.0
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 4.5e-34 150.6 179 43.0
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 1.7e-33 148.7 316 32.6
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 2.8e-28 131.3 159 45.9
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 2.8e-28 131.3 159 45.9
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 8.2e-28 129.8 103 62.1
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 3.0e-22 111.3 156 44.9
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.6e-21 108.2 93 59.1
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 1.5e-16 92.4 128 39.8
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 6.1e-15 87.0 100 45.0
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.8e-14 85.5 187 36.9
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 2.7e-10 71.6 48 75.0
vmacro16980 Vaccinium macrocarpon HOM05D000115 ORTHO05D003511 1.6e-07 62.4 42 76.2
vmacro13537 Vaccinium macrocarpon HOM05D005609 ORTHO05D006871 4.7e-07 60.8 29 96.6
vmacro21685 Vaccinium macrocarpon HOM05D001587 ORTHO05D002654 4.7e-07 60.8 89 42.7
vmacro13530 Vaccinium macrocarpon HOM05D002779 ORTHO05D003074 1.4e-06 59.3 32 90.6
vmacro19251 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 1.4e-06 59.3 29 93.1
vmacro01505 Vaccinium macrocarpon HOM05D000726 ORTHO05D427098 2.3e-06 58.5 63 54.0
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 3.1e-06 58.2 54 55.6
vmacro00603 Vaccinium macrocarpon HOM05D005615 ORTHO05D007558 3.1e-06 58.2 31 90.3
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 3.1e-06 58.2 57 56.1
vmacro04299 Vaccinium macrocarpon HOM05D001507 ORTHO05D002108 4.0e-06 57.8 38 73.7
vmacro04031 Vaccinium macrocarpon HOM05D000804 ORTHO05D000989 6.8e-06 57.0 31 87.1
vmacro11674 Vaccinium macrocarpon HOM05D005437 ORTHO05D006699 6.8e-06 57.0 32 87.5
vmacro09322 Vaccinium macrocarpon HOM05D001139 ORTHO05D000936 8.9e-06 56.6 69 49.3
vmacro12579 Vaccinium macrocarpon HOM05D003172 ORTHO05D003708 8.9e-06 56.6 29 93.1
vmacro12782 Vaccinium macrocarpon HOM05D002009 ORTHO05D005728 8.9e-06 56.6 29 93.1


User provided reference genes

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