Gene: AT5G26760
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G26760
- Transcript Identifier AT5G26760.2
- Gene Type Coding gene
- Location Chr5 : 9403869-9407170 : negative
Gene Family Information
- ID HOM05D005824
- #Genes/#Species 134/97
- Phylogenetic origin
- ID ORTHO05D007029
- #Genes/#Species 135/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G26760.2
- uniprot F4K1B1
Descriptions
- Description RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein
- Computational description unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Computational description unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0070940 | IEA | GOA Database | dephosphorylation of RNA polymerase II C-terminal domain | |
| GO:0070940 | IBA | Gene Ontology | dephosphorylation of RNA polymerase II C-terminal domain | 1 |
| GO:0070940 | IEA | InterPro | dephosphorylation of RNA polymerase II C-terminal domain | |
| GO:0030154 | IMP | Gene Ontology | cell differentiation | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043175 | IEA | Gene Ontology | RNA polymerase core enzyme binding | |
| GO:0043175 | IEA | InterPro | RNA polymerase core enzyme binding | |
| GO:0008420 | IEA | GOA Database | RNA polymerase II CTD heptapeptide repeat phosphatase activity | |
| GO:0008420 | IBA | Gene Ontology | RNA polymerase II CTD heptapeptide repeat phosphatase activity | 1 |
| GO:0008420 | IEA | InterPro | RNA polymerase II CTD heptapeptide repeat phosphatase activity | |
| GO:0004721 | IEA | GOA Database | phosphoprotein phosphatase activity | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0004722 | IEA | GOA Database | protein serine/threonine phosphatase activity | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
| GO:0106307 | IEA | Gene Ontology | protein threonine phosphatase activity | |
| GO:0106306 | IEA | Gene Ontology | protein serine phosphatase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM, IBA | Gene Ontology | nucleus | 1 2 |
| GO:0005737 | IBA | Gene Ontology | cytoplasm | 1 |
| GO:0005829 | IDA | Gene Ontology | cytosol | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.3.1.2 | RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II assembly and nuclear import.nuclear import factor (RIMA) |