Gene: PGR083G1123
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR083G1123
- Transcript Identifier PGR083G1123.03
- Gene Type Coding gene
- Location NC_045133.1 : 6710832-6713352 : positive
Gene Family Information
- ID HOM05D005824
- #Genes/#Species 134/97
- Phylogenetic origin
- ID ORTHO05D007029
- #Genes/#Species 135/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pid XP_031404135.1
- name LOC116213383
- name XM_031548275.1
- id gene-LOC116213383
- uniprot A0A6P8EFE0
Descriptions
- product putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog, transcript variant X4
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0070940 | IEA | GOA Database | dephosphorylation of RNA polymerase II C-terminal domain | |
| GO:0070940 | IEA | InterPro | dephosphorylation of RNA polymerase II C-terminal domain | |
| GO:0030154 | ISO | PLAZA Integrative Orthology | cell differentiation | AT5G26760 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008420 | IEA | GOA Database | RNA polymerase II CTD heptapeptide repeat phosphatase activity | |
| GO:0008420 | IEA | InterPro | RNA polymerase II CTD heptapeptide repeat phosphatase activity | |
| GO:0043175 | IEA | GOA Database | RNA polymerase core enzyme binding | |
| GO:0043175 | IEA | InterPro | RNA polymerase core enzyme binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0106306 | IEA | GOA Database | protein serine phosphatase activity | |
| GO:0106307 | IEA | GOA Database | protein threonine phosphatase activity | |
| GO:0004722 | IEA | GOA Database | protein serine/threonine phosphatase activity | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0004721 | IEA | GOA Database | phosphoprotein phosphatase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G26760 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT5G26760 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.3.1.2 | RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II assembly and nuclear import.nuclear import factor (RIMA) |