Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 0.0e+00 1464.9 724 100.0
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 0.0e+00 1117.1 722 77.7
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.6e-297 1024.6 730 73.0
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 6.7e-283 977.2 725 69.5
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.9e-253 879.4 731 64.3
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.4e-216 756.9 739 55.9
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 4.1e-216 755.4 739 55.8
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 6.4e-209 731.5 718 55.3
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 9.5e-205 717.6 734 54.9
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 6.2e-204 714.9 725 53.9
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.1e-200 704.1 754 50.8
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 3.2e-200 702.6 732 53.0
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.0e-198 697.6 760 51.4
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 6.2e-196 688.3 740 50.5
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.1e-192 677.6 735 50.6
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 6.6e-190 668.3 727 51.9
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 8.1e-188 661.4 861 46.6
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 6.8e-187 658.3 746 50.9
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.7e-185 653.7 730 50.3
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.7e-185 653.7 727 50.9
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 1.1e-184 651.0 601 57.7
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.9e-184 650.2 740 48.8
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 2.4e-184 649.8 738 49.3
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.2e-183 647.5 731 50.1
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 3.5e-183 646.0 715 51.5
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.0e-182 644.4 747 50.5
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 6.6e-182 641.7 730 50.5
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 8.7e-182 641.3 742 48.4
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.5e-181 640.6 736 48.4
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.9e-181 640.2 731 49.9
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.3e-180 637.5 731 49.8
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.6e-180 637.1 740 48.6
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.6e-180 636.0 741 48.7
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.8e-180 635.6 725 49.9
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 8.1e-180 634.8 737 49.4
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 3.1e-179 632.9 740 49.6
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 4.4e-178 629.0 710 51.4
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 9.9e-178 627.9 714 49.2
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 7.1e-176 621.7 716 49.6
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 2.7e-175 619.8 748 46.8
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.0e-174 616.3 738 47.0
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 3.0e-174 616.3 747 47.4
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 8.7e-174 614.8 730 47.9
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 8.7e-174 614.8 758 48.3
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.3e-172 610.9 727 48.4
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 6.2e-172 608.6 706 50.0
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 4.0e-171 605.9 728 48.2
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 9.0e-171 604.7 696 50.0
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.2e-170 604.4 716 49.2
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 8.4e-169 598.2 725 46.2
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.4e-168 597.4 709 49.4
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 4.2e-168 595.9 712 48.7
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 3.0e-166 589.7 737 46.0
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.4e-163 580.1 712 48.6
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.0e-163 579.3 748 45.5
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 2.0e-162 577.0 711 48.0
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 5.8e-162 575.5 713 47.5
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 1.7e-161 573.9 750 45.3
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 2.9e-161 573.2 750 45.1
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 4.9e-161 572.4 746 44.0
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 6.5e-161 572.0 703 48.1
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 3.2e-160 569.7 729 45.1
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.6e-159 567.4 705 47.0
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.5e-159 566.2 753 45.3
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.0e-158 564.7 713 44.7
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 3.0e-158 563.1 630 50.5
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 8.7e-158 561.6 703 47.5
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.5e-157 560.8 533 57.8
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.3e-156 557.8 400 68.8
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.1e-156 557.0 735 45.6
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 9.0e-155 551.6 732 44.4
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 2.0e-154 550.4 790 41.8
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 3.4e-154 549.7 721 45.1
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 3.8e-153 546.2 709 45.3
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 6.5e-153 545.4 715 43.1
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 2.5e-152 543.5 698 45.1
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 4.2e-152 542.7 710 46.5
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 6.1e-151 538.9 738 42.7
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 7.9e-151 538.5 723 42.6
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 3.0e-150 536.6 595 52.1
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 3.1e-147 526.6 704 44.5
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.4e-144 517.7 507 56.4
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.9e-144 517.3 778 40.9
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 5.1e-142 509.2 749 43.1
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 4.3e-141 506.1 707 42.3
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 2.2e-137 493.8 746 41.8
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 5.0e-137 492.7 725 44.6
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 1.1e-136 491.5 406 60.1
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.1e-135 487.3 639 46.9
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 6.7e-134 482.3 555 49.4
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 6.3e-132 475.7 708 41.7
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 8.2e-132 475.3 735 42.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.9e-129 466.8 738 41.1
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 3.8e-129 466.5 683 40.1
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 5.0e-129 466.1 555 47.9
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 6.5e-129 465.7 619 43.1
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 9.4e-128 461.8 717 41.1
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 4.7e-127 459.5 718 41.4
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 5.7e-125 452.6 723 39.4
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 3.7e-124 449.9 731 39.1
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 8.2e-124 448.7 738 39.6
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 7.0e-123 445.7 470 52.8
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 3.5e-122 443.4 703 40.3
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 6.5e-121 439.1 730 39.0
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 7.2e-120 435.6 731 39.8
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 8.0e-119 432.2 729 39.5
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 8.8e-118 428.7 699 38.8
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 7.5e-117 425.6 598 42.3
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 3.5e-114 416.8 721 37.6
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 3.5e-106 390.2 542 44.3
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.9e-105 387.1 734 35.6
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 3.8e-105 386.7 706 36.8
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 6.8e-102 375.9 433 47.3
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 5.7e-101 372.9 723 35.7
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 6.8e-94 349.4 696 34.1
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.2e-93 348.6 490 43.3
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.4e-93 347.1 368 51.4
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.2e-90 338.6 301 60.1
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.3e-89 335.1 363 51.8
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 6.2e-87 326.2 731 34.1
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 3.6e-79 300.4 370 44.9
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 6.4e-76 289.7 551 35.9
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 9.6e-72 275.8 407 42.5
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.3e-68 265.4 721 30.0
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 3.2e-59 234.2 171 65.5
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 8.1e-55 219.5 609 27.3
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.1e-54 219.2 240 54.2
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 6.9e-54 216.5 394 37.3
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.9e-51 208.4 626 26.0
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.3e-49 202.2 142 66.9
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 6.9e-46 189.9 243 43.2
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.5e-43 181.4 499 30.5
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 5.7e-40 170.2 522 28.7
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.4e-38 165.6 124 64.5
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 4.5e-37 160.6 124 62.9
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.9e-37 160.2 249 39.4
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.9e-37 160.2 269 34.9
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 6.5e-36 156.8 209 45.0
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.7e-33 146.4 583 24.0
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 9.4e-27 126.3 122 50.8
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.7e-25 120.2 333 32.4
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 6.7e-25 120.2 159 42.1
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.2e-19 100.9 203 35.5
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.1e-14 86.3 200 29.0
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.0e-13 82.0 234 32.9
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 7.7e-13 80.1 291 25.4
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 1.0e-12 79.7 197 31.0
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.5e-11 75.9 146 37.7
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 1.5e-11 75.9 76 52.6
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.2e-10 72.8 160 31.9
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 1.6e-10 72.4 87 46.0
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.1e-10 70.5 82 48.8
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 8.0e-10 70.1 74 44.6
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 3.0e-09 68.2 165 31.5
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 6.7e-09 67.0 113 32.7
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 6.7e-09 67.0 119 35.3
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 2.4e-06 58.5 61 47.5
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 4.1e-06 57.8 61 45.9


User provided reference genes

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