Gene: Solyc09g007120.4
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc09g007120.4
- Transcript Identifier Solyc09g007120.4.1
- Gene Type Coding gene
- Location SL4.0ch09 : 779406-782460 : positive
Gene Family Information
- ID HOM05D001988
- #Genes/#Species 333/100
- Phylogenetic origin
- ID ORTHO05D004985
- #Genes/#Species 166/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc09g007120.4.1
- uniprot A0A3Q7HXZ4
- gene_id Solyc09g007120
Descriptions
- Description TATA box-binding protein-associated factor RNA polymerase I subunit B (AHRD V3.3 *** A0A2I4EE95_9ROSI)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT2G02955 |
| GO:0042790 | IBA | GOA Database | nucleolar large rRNA transcription by RNA polymerase I | |
| GO:0001188 | IEA | GOA Database | RNA polymerase I preinitiation complex assembly | |
| GO:0001188 | IEA | InterPro | RNA polymerase I preinitiation complex assembly | |
| GO:0006360 | IEA | GOA Database | transcription by RNA polymerase I | |
| GO:0006360 | IEA | InterPro | transcription by RNA polymerase I |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0001164 | IBA IEA | GOA Database | RNA polymerase I core promoter sequence-specific DNA binding | |
| GO:0001164 | IEA | InterPro | RNA polymerase I core promoter sequence-specific DNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G02955 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005668 | IBA | GOA Database | RNA polymerase transcription factor SL1 complex | |
| GO:0070860 | IBA IEA | GOA Database | RNA polymerase I core factor complex | |
| GO:0070860 | IEA | InterPro | RNA polymerase I core factor complex | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005730 | IEA | GOA Database | nucleolus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR033599 | RNA polymerase I transcription initiation factor TAF1B/Rrn7 |
| Mapman id | Description |
|---|---|
| 15.2.3 | RNA biosynthesis.RNA polymerase I-dependent transcription.transcription initiation factor (CCG/MEE12) |