Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 1.3e-125 453.0 223 100.0
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 6.7e-93 344.4 231 77.5
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 6.3e-91 337.8 231 75.8
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 6.3e-91 337.8 231 77.1
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 8.2e-91 337.4 223 77.6
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.2e-86 323.6 231 71.9
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.6e-84 315.8 223 73.5
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 4.4e-84 315.1 232 71.1
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 8.3e-83 310.8 234 68.8
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 7.0e-82 307.8 232 69.0
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 1.2e-81 307.0 232 69.0
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 1.6e-81 306.6 232 69.0
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 3.8e-80 302.0 232 68.5
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 1.9e-79 299.7 223 68.6
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.5e-79 299.3 235 66.8
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 2.5e-79 299.3 240 65.0
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 7.2e-79 297.7 232 67.2
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 9.4e-79 297.4 232 64.7
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.6e-78 296.6 230 66.5
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 2.1e-78 296.2 235 66.0
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 2.1e-78 296.2 230 65.2
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.1e-78 296.2 230 65.7
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 3.6e-78 295.4 232 65.9
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 4.7e-78 295.0 232 63.8
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 8.0e-78 294.3 233 67.8
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.3e-77 292.7 230 64.3
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 3.0e-77 292.4 235 66.0
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 6.8e-77 291.2 232 65.1
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 2.6e-76 289.3 232 65.1
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 3.4e-76 288.9 232 63.8
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.7e-76 288.1 230 63.9
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 7.5e-76 287.7 229 64.2
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 7.5e-76 287.7 223 68.2
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 7.5e-76 287.7 230 63.9
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.3e-75 287.0 226 64.2
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 2.2e-75 286.2 224 64.7
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 3.7e-75 285.4 227 67.4
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 4.9e-75 285.0 234 64.5
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 6.3e-75 284.6 231 64.9
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 6.3e-75 284.6 230 63.5
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 1.1e-74 283.9 226 62.8
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.1e-74 283.9 225 66.2
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.4e-74 283.5 232 65.9
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 1.8e-74 283.1 232 63.8
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.1e-74 282.3 232 62.9
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 4.1e-74 282.0 227 65.6
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.1e-74 282.0 224 64.7
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 4.1e-74 282.0 223 67.3
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 7.0e-74 281.2 230 62.2
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 7.0e-74 281.2 230 62.2
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 2.0e-73 279.6 232 63.8
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 2.7e-73 279.3 205 68.8
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.5e-73 278.9 232 62.9
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 5.9e-73 278.1 227 65.2
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 7.7e-73 277.7 232 62.9
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 1.0e-72 277.3 228 65.4
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 1.0e-72 277.3 228 65.8
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.9e-71 273.1 234 63.2
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 4.3e-71 271.9 232 62.5
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 5.6e-71 271.6 228 63.6
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.6e-70 270.0 234 63.2
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 3.0e-69 265.8 207 64.3
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 3.4e-68 262.3 232 61.6
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 3.4e-68 262.3 272 54.8
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 4.4e-68 261.9 228 61.4
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 2.2e-67 259.6 230 60.0
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 2.9e-67 259.2 225 61.3
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 6.4e-67 258.1 227 58.6
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 1.1e-66 257.3 230 59.1
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 1.4e-66 256.9 233 58.4
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.4e-66 256.9 206 62.6
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 3.2e-66 255.8 233 58.8
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 5.4e-66 255.0 233 58.4
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 1.2e-65 253.8 232 58.6
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 2.0e-65 253.1 233 58.4
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 2.0e-65 253.1 233 57.5
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 2.0e-65 253.1 193 65.8
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 3.5e-65 252.3 217 60.4
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 4.6e-65 251.9 226 58.8
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 5.9e-65 251.5 233 57.9
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 3.0e-64 249.2 233 57.5
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 6.6e-64 248.1 202 61.4
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 3.3e-63 245.7 209 60.3
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 9.5e-63 244.2 204 59.8
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 2.1e-62 243.0 230 56.5
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 4.0e-61 238.8 159 73.0
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 5.2e-61 238.4 265 51.7
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 2.0e-60 236.5 260 53.1
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 3.4e-60 235.7 179 72.1
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.3e-59 233.8 209 60.3
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 1.3e-59 233.8 211 57.8
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 3.2e-58 229.2 179 68.7
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 2.0e-57 226.5 230 56.1
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 3.5e-57 225.7 203 59.6
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 6.0e-57 224.9 229 55.0
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 7.8e-57 224.6 230 54.8
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 2.5e-55 219.5 155 70.3
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 8.1e-54 214.5 216 54.2
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 5.2e-53 211.8 225 53.8
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 8.9e-53 211.1 227 53.3
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 8.9e-53 211.1 227 55.9
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 2.6e-52 209.5 206 56.3
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 5.8e-52 208.4 208 56.2
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 3.9e-48 195.7 122 74.6
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 7.3e-47 191.4 221 50.7
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 8.9e-45 184.5 255 44.3
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 5.8e-44 181.8 265 43.8
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 6.4e-43 178.3 143 60.8
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 1.1e-42 177.6 228 48.2
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 3.2e-42 176.0 133 63.2
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 7.1e-42 174.9 216 45.8
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.2e-41 174.1 179 54.7
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.6e-41 173.7 173 57.8
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 4.6e-41 172.2 172 55.8
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 7.3e-39 164.9 187 52.9
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 4.0e-37 159.1 252 39.7
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 2.2e-35 153.3 192 47.4
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 4.3e-31 139.0 86 76.7
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 2.9e-27 126.3 171 47.4
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 2.7e-25 119.8 135 50.4
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 9.6e-23 111.3 70 75.7
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.5e-20 104.0 57 75.4
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 3.4e-20 102.8 67 65.7
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 2.3e-16 90.1 50 76.0
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 3.0e-16 89.7 131 39.7
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.0e-16 89.7 49 79.6
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.6e-14 84.0 70 61.4
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 2.8e-14 83.2 58 72.4
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.0e-12 77.0 71 59.2
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 2.6e-12 76.6 48 77.1
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.8e-12 75.5 48 77.1
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 7.6e-12 75.1 48 77.1
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.7e-11 73.9 48 75.0
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 1.7e-11 73.9 48 72.9
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 7.1e-10 68.6 43 76.7
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.6e-09 67.4 43 76.7
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 3.9e-08 62.8 42 69.0
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 1.9e-07 60.5 29 89.7
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.5e-07 60.1 92 42.4
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 8.2e-06 55.1 59 49.2


User provided reference genes

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