Gene: AT5G27300

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G27300
  • Transcript Identifier AT5G27300.1
  • Gene Type Coding gene
  • Location Chr5 : 9620810-9624990 : positive

Gene Family Information

  • ID HOM05D005584
  • #Genes/#Species 138/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G27300.1
  • uniprot F4K2V9

Descriptions

  • Description pentatricopeptide (PPR) repeat-containing protein
  • Computational description pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 17117 Blast hits to 5443 proteins in 174 species: Archae - 1; Bacteria - 0; Metazoa - 104; Fungi - 8; Plants - 16744; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008150
ND
Gene Ontologybiological_process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISM
Gene Ontologymitochondrion

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR002885 Pentatricopeptide repeat
IPR035979 RNA-binding domain superfamily
IPR034264 RBM48, RNA recognition motif
Mapman id Description
16.2.4.4 RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.splicing factor (RBM48)