Gene: AT2G27790
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G27790
- Transcript Identifier AT2G27790.3
- Gene Type Coding gene
- Location Chr2 : 11847335-11849079 : negative
Gene Family Information
- ID HOM05D005584
- #Genes/#Species 138/95
- Phylogenetic origin
- ID ORTHO05D006809
- #Genes/#Species 138/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT2G27790.3
- uniprot F4IGS5
Descriptions
- Description RNA-binding (RRM/RBD/RNP motifs) family protein
- Computational description RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G27300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008150 | ND | Gene Ontology | biological_process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005654 | IBA | Gene Ontology | nucleoplasm | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR039599 | RNA-binding protein 48 |
| Mapman id | Description |
|---|---|
| 16.2.4.4 | RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.splicing factor (RBM48) |