Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 3.9e-268 927.5 468 100.0
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 3.2e-185 652.1 472 76.3
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 1.3e-167 593.6 472 68.9
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 1.2e-160 570.5 436 71.6
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 8.4e-154 547.7 447 68.9
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 1.3e-143 513.8 444 65.3
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 2.8e-141 506.1 405 65.9
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 1.4e-140 503.8 412 64.6
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 1.5e-139 500.4 406 65.0
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 3.4e-139 499.2 463 60.3
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.0e-138 497.7 398 64.6
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 6.5e-138 495.0 438 60.7
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 1.1e-137 494.2 420 62.9
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 1.9e-137 493.4 384 66.7
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 4.2e-137 492.3 371 68.5
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 7.2e-137 491.5 414 63.8
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 9.4e-137 491.1 407 63.4
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 1.2e-136 490.7 377 66.3
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 2.7e-136 489.6 401 64.6
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 3.6e-136 489.2 413 63.9
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 6.1e-136 488.4 407 63.1
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 1.4e-135 487.3 393 64.6
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 1.1e-134 484.2 435 61.6
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 3.3e-134 482.6 406 62.6
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 4.3e-134 482.3 379 66.0
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 4.3e-134 482.3 448 61.6
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 1.7e-133 480.3 436 62.2
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 1.4e-132 477.2 427 62.3
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 5.3e-132 475.3 399 61.4
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 1.2e-131 474.2 344 68.9
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 5.9e-131 471.9 410 62.7
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 1.0e-130 471.1 435 60.9
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 3.8e-130 469.2 379 64.1
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 6.5e-130 468.4 430 60.0
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 1.1e-129 467.6 419 60.6
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 1.9e-129 466.8 452 57.7
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 2.5e-129 466.5 390 64.9
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 5.5e-129 465.3 353 68.0
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 7.2e-129 464.9 414 61.1
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 9.4e-129 464.5 442 57.0
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 1.2e-128 464.2 422 60.4
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 2.1e-128 463.4 423 59.1
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 3.6e-128 462.6 380 62.6
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 4.7e-128 462.2 434 59.0
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 7.9e-128 461.5 405 60.2
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 7.9e-128 461.5 434 59.7
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.8e-127 460.3 407 61.4
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 2.3e-127 459.9 424 58.0
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 1.5e-126 457.2 422 58.8
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 4.4e-126 455.7 385 61.3
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 7.4e-126 454.9 380 63.7
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 9.7e-126 454.5 398 59.5
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 1.7e-125 453.8 426 58.2
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 4.8e-125 452.2 386 61.4
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 4.8e-125 452.2 419 59.4
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 4.8e-125 452.2 353 63.7
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 6.3e-125 451.8 402 58.7
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 2.4e-124 449.9 384 60.9
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 3.1e-124 449.5 327 70.6
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 4.1e-124 449.1 387 61.2
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 5.3e-124 448.7 387 61.2
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 7.0e-124 448.4 412 59.0
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 7.0e-124 448.4 393 61.3
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 2.6e-123 446.4 447 56.8
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 4.5e-123 445.7 381 60.9
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 4.5e-123 445.7 402 58.5
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 4.5e-123 445.7 384 60.9
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 5.9e-123 445.3 393 58.3
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 1.3e-122 444.1 400 58.5
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 1.7e-122 443.7 408 56.6
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 2.9e-122 443.0 408 57.1
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 6.5e-122 441.8 384 60.4
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 1.1e-121 441.0 375 61.3
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 7.2e-121 438.3 414 56.3
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 9.4e-121 438.0 372 59.7
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 2.1e-120 436.8 387 58.7
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 2.3e-119 433.3 413 58.1
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 7.4e-118 428.3 449 55.5
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 1.4e-116 424.1 344 61.3
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 1.4e-116 424.1 251 81.3
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 2.4e-116 423.3 383 56.4
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 4.1e-116 422.5 350 62.0
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 1.2e-112 411.0 299 69.9
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 3.7e-109 399.4 370 56.8
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 1.1e-108 397.9 338 64.5
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 8.5e-106 388.3 304 64.8
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 5.7e-102 375.6 402 51.7
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 4.1e-100 369.4 397 51.6
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 4.1e-100 369.4 397 51.6
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 3.5e-99 366.3 371 51.2
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 7.7e-99 365.2 299 63.5
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 1.4e-95 354.4 369 50.4
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 1.8e-92 344.0 438 47.7
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 5.4e-92 342.4 260 65.4
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 2.7e-91 340.1 349 49.9
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 3.5e-91 339.7 361 49.0
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 4.7e-88 329.3 352 50.3
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 4.0e-87 326.2 359 49.6
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 1.3e-85 321.2 418 49.0
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 2.6e-78 297.0 390 45.1
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 1.6e-75 287.7 211 70.6
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 2.3e-71 273.9 169 79.3
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 4.9e-69 266.2 289 52.6
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 2.4e-68 263.8 235 60.0
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 3.2e-68 263.5 211 64.9
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 4.1e-68 263.1 202 66.3
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 9.9e-62 241.9 430 36.7
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 1.8e-55 221.1 457 33.7
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 7.1e-52 209.1 167 65.3
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 1.6e-51 208.0 240 50.0
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.2e-38 165.2 158 60.1
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 3.4e-30 137.1 95 69.5
Hma1.2p1_0612F.1_g188810 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 1.4e-20 105.1 56 92.9
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 3.6e-19 100.5 352 26.1
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 1.6e-11 75.1 221 29.4
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 1.6e-11 75.1 92 46.7
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 5.1e-10 70.1 194 28.9
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 8.2e-08 62.8 81 40.7
PRCOL_00005231 Prasinoderma coloniale HOM05D007129 ORTHO05D008680 1.6e-06 58.5 154 31.8


User provided reference genes

Program Settings