Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 2.5e-164 582.0 289 100.0
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 1.3e-91 340.5 245 71.8
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 9.0e-90 334.3 245 69.8
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 2.0e-89 333.2 194 84.0
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 4.5e-89 332.0 198 83.8
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.3e-88 330.5 194 83.0
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 2.2e-88 329.7 184 86.4
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 5.0e-88 328.6 243 71.6
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 5.0e-88 328.6 270 67.4
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 6.5e-88 328.2 224 77.7
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 8.5e-88 327.8 217 77.0
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 8.5e-88 327.8 194 82.5
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.1e-87 327.4 194 82.5
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.1e-87 327.4 241 72.6
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.9e-87 326.6 224 74.1
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 2.5e-87 326.2 239 73.2
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.5e-87 326.2 262 67.6
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.5e-87 326.2 262 68.3
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 3.2e-87 325.9 196 82.1
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 3.2e-87 325.9 236 73.7
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 5.5e-87 325.1 190 84.2
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 7.2e-87 324.7 181 87.3
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.4e-87 324.3 265 68.3
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.4e-87 324.3 265 68.3
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.6e-86 323.6 190 83.7
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 1.6e-86 323.6 249 67.9
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.7e-86 322.8 226 74.3
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 2.7e-86 322.8 243 69.5
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 3.6e-86 322.4 205 77.1
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 4.6e-86 322.0 235 72.8
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 4.6e-86 322.0 245 67.8
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 4.6e-86 322.0 180 86.7
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.1e-86 321.6 247 68.4
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 6.1e-86 321.6 228 70.6
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 7.9e-86 321.2 271 64.2
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.4e-85 320.5 202 77.7
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.4e-85 320.5 214 76.6
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.8e-85 320.1 223 71.7
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 3.0e-85 319.3 206 77.2
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 3.9e-85 318.9 244 67.2
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.7e-85 318.2 247 68.0
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 8.8e-85 317.8 183 83.6
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.1e-84 317.4 262 66.0
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.1e-84 317.4 226 71.2
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 1.5e-84 317.0 196 77.6
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.5e-84 317.0 221 71.5
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 1.5e-84 317.0 212 76.4
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 2.5e-84 316.2 245 69.4
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 2.5e-84 316.2 233 68.7
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 2.5e-84 316.2 262 66.0
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.5e-84 316.2 220 74.5
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 3.3e-84 315.8 230 69.1
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 3.3e-84 315.8 241 69.3
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 5.7e-84 315.1 248 66.9
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 5.7e-84 315.1 199 77.9
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 7.4e-84 314.7 244 67.6
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 9.7e-84 314.3 232 69.8
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.7e-83 313.5 216 74.1
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.7e-83 313.5 180 83.3
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 3.7e-83 312.4 220 70.5
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.7e-83 312.4 234 67.5
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.8e-83 312.0 231 68.0
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 4.8e-83 312.0 230 68.3
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.8e-83 312.0 234 68.4
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 4.8e-83 312.0 249 65.9
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.3e-83 311.6 237 68.8
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 8.2e-83 311.2 232 68.1
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 1.1e-82 310.8 226 69.0
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.8e-82 310.1 235 66.8
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 1.8e-82 310.1 213 72.8
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 1.8e-82 310.1 229 70.3
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.8e-82 310.1 226 69.0
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 2.4e-82 309.7 236 67.8
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 3.1e-82 309.3 216 71.8
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 4.1e-82 308.9 241 68.9
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 6.9e-82 308.1 223 71.7
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 6.9e-82 308.1 220 69.1
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 9.1e-82 307.8 217 69.6
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.2e-81 307.4 216 71.3
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.2e-81 307.4 244 65.6
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 1.5e-81 307.0 252 67.1
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.5e-81 307.0 210 74.3
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.6e-81 306.2 231 68.4
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.6e-81 306.2 218 71.6
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.4e-81 305.8 192 77.6
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 4.5e-81 305.4 183 82.0
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.3e-80 303.9 240 65.8
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 2.2e-80 303.1 188 79.8
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 2.9e-80 302.8 215 68.8
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 8.5e-80 301.2 208 73.6
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.5e-80 301.2 227 68.7
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.1e-79 300.8 213 71.8
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 2.5e-79 299.7 218 70.6
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 2.5e-79 299.7 196 76.0
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.2e-79 298.9 241 66.8
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 2.1e-78 296.6 243 64.6
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 2.3e-77 293.1 215 66.5
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.9e-77 292.4 232 66.4
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.1e-77 292.0 223 67.3
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.1e-76 290.8 203 71.9
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 5.7e-76 288.5 223 66.4
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.8e-75 286.2 219 66.2
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.8e-75 285.4 227 65.6
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.4e-74 283.9 172 82.0
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.4e-74 283.1 215 67.0
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.1e-74 282.7 225 65.3
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 5.3e-74 282.0 235 63.0
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 5.3e-74 282.0 215 67.9
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 1.5e-73 280.4 246 61.0
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 2.6e-73 279.6 195 72.8
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 3.5e-73 279.3 228 62.7
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 7.7e-73 278.1 178 73.6
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 7.7e-73 278.1 185 74.1
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.3e-72 277.3 263 60.5
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 1.7e-72 276.9 258 57.8
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.7e-72 276.9 178 75.3
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.9e-72 276.2 200 68.0
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.1e-71 274.2 242 59.5
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 4.2e-71 272.3 190 71.1
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 5.5e-71 271.9 243 57.2
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 7.2e-71 271.6 200 66.0
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 9.4e-71 271.2 243 57.2
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.2e-70 270.8 243 58.8
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.2e-70 270.8 182 71.4
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.1e-70 270.0 250 58.4
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 8.0e-70 268.1 204 64.7
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-69 266.9 238 57.6
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.3e-69 266.5 239 60.3
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 8.8e-69 264.6 244 57.0
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 8.8e-69 264.6 244 57.0
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 1.1e-68 264.2 235 60.4
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 4.8e-67 258.8 236 62.3
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.6e-65 253.8 176 69.3
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.9e-63 246.9 152 81.6
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 4.2e-63 245.7 154 78.6
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.0e-61 241.1 208 61.5
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 8.8e-61 238.0 216 60.6
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 5.9e-57 225.3 176 69.3
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 8.0e-54 214.9 165 68.5
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.8e-53 213.8 133 76.7
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.0e-52 210.3 227 50.7
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 6.3e-51 205.3 116 84.5
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.6e-49 200.7 125 81.6
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 2.7e-49 199.9 244 51.6
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.5e-47 194.1 124 77.4
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 5.5e-47 192.2 218 49.1
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 7.2e-47 191.8 183 58.5
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 2.6e-44 183.3 203 51.7
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 2.2e-43 180.3 183 56.8
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 4.9e-43 179.1 165 60.6
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 6.3e-43 178.7 144 68.1
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.4e-42 177.6 128 70.3
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 8.0e-38 161.8 212 43.9
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 4.1e-34 149.4 165 52.1
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.2e-28 131.3 78 79.5
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 1.5e-28 131.0 102 65.7
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 2.2e-27 127.1 76 77.6
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 3.7e-27 126.3 76 77.6
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.9e-23 114.0 121 54.5
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 3.3e-23 113.2 108 59.3
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.8e-21 107.5 114 51.8
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.5e-20 104.4 86 64.0
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 3.1e-13 80.1 219 31.1
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.5e-12 77.8 147 34.7
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.7e-11 74.3 47 76.6
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 2.2e-11 73.9 181 32.6
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.1e-10 71.6 188 32.4
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 1.9e-10 70.9 254 27.2
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 3.2e-10 70.1 55 61.8
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 5.1e-08 62.8 90 37.8
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 3.3e-07 60.1 127 32.3
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 2.1e-06 57.4 42 59.5
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 4.8e-06 56.2 49 59.2
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 4.8e-06 56.2 100 39.0


User provided reference genes

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