Gene: AT2G43090

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G43090
  • Transcript Identifier AT2G43090.1
  • Gene Type Coding gene
  • Location Chr2 : 17918957-17919712 : positive

Gene Family Information

  • ID HOM05D004152
  • #Genes/#Species 170/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G43090.1
  • Alias IPMI SSU1,isopropylmalate isomerase small subunit 1
  • uniprot Q9ZW85

Descriptions

  • Description Aconitase/3-isopropylmalate dehydratase protein
  • Computational description Aconitase/3-isopropylmalate dehydratase protein; FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: response to salt stress, metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit-like (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: isopropylmalate isomerase 1 (TAIR:AT3G58990.1); Has 8413 Blast hits to 8412 proteins in 2279 species: Archae - 351; Bacteria - 5415; Metazoa - 18; Fungi - 351; Plants - 71; Viruses - 0; Other Eukaryotes - 2207 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019761
IMP
Gene Ontologyglucosinolate biosynthetic process1
GO:0009082
IEA
GOA Databasebranched-chain amino acid biosynthetic process
GO:0008652
IEA
GOA Databasecellular amino acid biosynthetic process
GO:0009658
IMP
Gene Ontologychloroplast organization1
GO:0048229
IMP
Gene Ontologygametophyte development2
GO:0009098
IMP
IEA
Gene Ontologyleucine biosynthetic process2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016836
ISO
PLAZA Homology (enrichment)hydro-lyase activity HOM05D004152
GO:0016829
IEA
GOA Databaselyase activity
GO:0003861
IEA
GOA Database3-isopropylmalate dehydratase activity
GO:0003861
IDA
Gene Ontology3-isopropylmalate dehydratase activity2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast3
GO:0009570
IEA
GOA Databasechloroplast stroma
GO:0009570
IDA, HDA
Gene Ontologychloroplast stroma2 4
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
IDA, HDA
Gene Ontologyplastid5 6
GO:0005739
ISM
Gene Ontologymitochondrion

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR033940 3-isopropylmalate dehydratase, swivel domain
IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain
IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel
Mapman id Description
30.1.1.3.2 Clade-specific metabolism.Brassicaceae.glucosinolate biosynthesis.methylthioalkylmalate isomerase heterodimer.small subunit
4.1.3.2.5.2.2 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.leucine.isopropylmalate isomerase heterodimer.small subunit