Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 5.2e-215 750.7 374 100.0
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 7.5e-129 464.5 364 65.7
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 5.4e-127 458.4 383 62.9
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 2.0e-126 456.4 384 62.8
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 4.5e-126 455.3 385 62.9
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 1.7e-125 453.4 381 62.7
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 2.9e-125 452.6 351 66.7
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 1.1e-124 450.7 385 63.4
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 1.1e-124 450.7 385 62.3
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.5e-124 450.3 360 65.0
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 1.5e-124 450.3 385 63.4
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 1.5e-124 450.3 364 64.0
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 2.5e-124 449.5 365 65.2
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 9.5e-124 447.6 361 64.0
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 9.5e-124 447.6 348 65.8
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.6e-123 446.8 372 62.4
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 2.1e-123 446.4 365 63.8
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 2.1e-123 446.4 394 61.2
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 3.6e-123 445.7 370 64.3
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 6.1e-123 444.9 326 68.7
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 6.1e-123 444.9 360 63.9
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 1.8e-122 443.4 353 64.0
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 4.0e-122 442.2 358 64.2
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 1.5e-121 440.3 366 63.1
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 7.5e-121 438.0 367 62.7
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 9.8e-121 437.6 347 65.1
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.7e-120 436.8 360 63.3
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 2.2e-120 436.4 334 65.9
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 4.9e-120 435.3 366 63.7
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 8.3e-120 434.5 370 61.6
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 8.3e-120 434.5 362 64.1
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 8.3e-120 434.5 404 59.7
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 1.9e-119 433.3 344 64.0
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 3.2e-119 432.6 360 62.5
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 3.2e-119 432.6 348 63.2
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 3.2e-119 432.6 363 62.5
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 4.1e-119 432.2 353 63.5
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 9.2e-119 431.0 356 61.5
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 1.2e-118 430.6 349 65.3
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 1.2e-118 430.6 375 60.5
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 2.7e-118 429.5 330 67.3
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 6.0e-118 428.3 357 64.1
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.0e-117 427.6 355 61.4
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 1.7e-117 426.8 379 58.3
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.3e-117 426.4 356 61.0
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 3.0e-117 426.0 353 63.2
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 6.6e-117 424.9 358 64.0
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 1.1e-116 424.1 352 62.8
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 1.5e-116 423.7 344 63.7
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 4.3e-116 422.2 362 61.9
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 4.3e-116 422.2 372 60.5
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 5.6e-116 421.8 358 62.0
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 1.6e-115 420.2 363 59.8
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 3.6e-115 419.1 340 63.2
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 3.6e-115 419.1 358 60.9
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 6.2e-115 418.3 349 62.5
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 8.0e-115 417.9 355 60.8
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 1.4e-114 417.2 340 63.2
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 1.8e-114 416.8 325 65.5
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 1.8e-114 416.8 357 60.8
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 1.8e-114 416.8 363 60.6
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 2.3e-114 416.4 319 64.6
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 3.1e-114 416.0 319 65.2
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 5.2e-114 415.2 319 64.3
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 5.2e-114 415.2 319 64.3
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 8.9e-114 414.5 358 61.2
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 2.6e-113 412.9 356 60.7
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 2.6e-113 412.9 349 64.2
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 4.4e-113 412.1 330 66.1
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 7.5e-113 411.4 392 55.6
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 1.3e-112 410.6 350 61.7
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 1.3e-112 410.6 353 62.3
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 6.4e-112 408.3 350 61.4
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 8.3e-112 407.9 319 65.2
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 3.2e-111 406.0 358 60.6
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 2.7e-110 402.9 344 63.1
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 2.7e-110 402.9 387 55.6
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 4.6e-110 402.1 464 51.3
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 1.3e-109 400.6 318 65.7
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 1.3e-109 400.6 349 61.3
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 1.7e-109 400.2 383 58.7
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 5.1e-109 398.7 373 58.4
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 8.1e-107 391.3 362 58.0
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 2.0e-105 386.7 319 63.3
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.2e-104 383.3 356 57.3
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 3.7e-104 382.5 377 56.5
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 4.9e-104 382.1 348 58.0
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 2.4e-103 379.8 432 51.4
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 1.6e-102 377.1 328 59.5
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 6.6e-101 371.7 328 59.1
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 8.6e-101 371.3 354 55.9
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 8.6e-101 371.3 354 55.9
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 4.9e-96 355.5 314 58.0
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 8.4e-96 354.8 323 58.5
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 3.5e-94 349.4 308 60.7
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 1.1e-92 344.4 303 59.7
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 7.6e-89 331.6 310 54.8
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 1.3e-88 330.9 370 50.0
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 1.2e-86 324.3 348 54.0
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 4.0e-82 309.3 233 65.2
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.5e-81 307.4 275 59.3
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 3.5e-78 296.2 267 59.9
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 1.1e-76 291.2 449 40.3
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.2e-70 271.2 175 72.0
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 5.3e-66 255.8 207 61.4
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 8.2e-59 231.9 182 62.6
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 3.2e-55 219.9 165 69.1
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 9.4e-55 218.4 187 59.9
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 4.5e-49 199.5 436 34.9
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 2.0e-41 174.1 144 64.6
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 3.2e-39 166.8 279 42.3
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 6.8e-29 132.5 78 76.9
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 2.2e-24 117.5 136 50.0
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 7.5e-20 102.4 315 27.9
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 9.8e-20 102.1 316 27.8
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 7.0e-18 95.9 316 26.6
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 1.6e-14 84.7 315 26.7
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 2.1e-14 84.3 318 25.8
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 3.6e-14 83.6 326 25.5
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 4.7e-14 83.2 318 28.3
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 2.3e-13 80.9 318 27.7
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 2.3e-13 80.9 316 27.8
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 3.0e-13 80.5 318 27.7
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 3.0e-13 80.5 198 29.3
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 6.8e-13 79.3 317 24.9
Peaxi162Scf00164g00315 Petunia axillaris HOM05D006708 ORTHO05D008321 1.2e-12 78.6 336 26.5
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 1.5e-12 78.2 318 27.0
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 2.0e-12 77.8 318 23.9
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 4.4e-12 76.6 249 26.9
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 5.7e-12 76.3 329 25.5
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 1.3e-11 75.1 198 29.3
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 4.9e-11 73.2 318 23.9
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 8.3e-11 72.4 53 66.0
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 1.4e-10 71.6 223 28.3
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 1.4e-10 71.6 318 23.9
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 1.4e-10 71.6 371 24.0
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 1.8e-10 71.2 178 29.2
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 2.4e-10 70.9 198 27.3
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 7.0e-10 69.3 319 26.0
GSVIVG01017693001 Vitis vinifera HOM05D006708 ORTHO05D008321 1.2e-09 68.6 319 23.2
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 7.8e-09 65.9 300 24.7
DCAR_023411 Daucus carota HOM05D006708 ORTHO05D008321 3.9e-08 63.5 308 21.8
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 1.1e-07 62.0 299 26.1
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 2.1e-06 57.8 311 24.4
THA.LOC104816107 Tarenaya hassleriana HOM05D005655 ORTHO05D007386 8.0e-06 55.8 319 23.2


User provided reference genes

Program Settings