Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 0.0e+00 1407.5 728 100.0
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1104.0 708 80.2
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1099.3 692 81.4
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1083.2 706 78.6
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1079.3 716 77.4
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1078.5 706 78.8
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1076.6 706 77.9
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1075.5 763 74.0
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 8.4e-310 1066.6 715 76.6
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.4e-309 1065.8 707 77.8
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 5.4e-309 1063.9 716 76.3
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 3.5e-308 1061.2 706 76.3
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 1.0e-307 1059.7 716 76.0
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 5.1e-307 1057.4 716 76.0
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 5.1e-307 1057.4 711 76.2
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 6.6e-307 1057.0 707 77.4
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 8.7e-307 1056.6 714 76.9
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 8.7e-307 1056.6 711 76.2
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.9e-306 1055.4 707 77.1
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 2.5e-306 1055.0 706 76.9
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 2.5e-306 1055.0 706 76.9
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 2.5e-306 1055.0 706 76.9
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 2.5e-306 1055.0 716 75.6
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 3.3e-306 1054.7 707 76.9
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 4.3e-306 1054.3 733 74.5
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 7.4e-306 1053.5 720 75.8
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 9.6e-306 1053.1 711 76.4
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 1.3e-305 1052.7 720 75.1
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.6e-305 1052.4 716 75.8
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 3.6e-305 1051.2 715 75.2
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 6.2e-305 1050.4 716 75.0
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 8.1e-305 1050.0 715 75.1
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.1e-304 1049.7 728 75.0
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.1e-304 1049.7 715 75.1
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 1.4e-304 1049.3 715 75.8
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 2.4e-304 1048.5 716 75.8
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 4.0e-304 1047.7 711 75.5
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 9.0e-304 1046.6 716 75.1
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 2.6e-303 1045.0 709 76.3
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 2.6e-303 1045.0 693 77.5
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 4.5e-303 1044.3 716 75.3
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 7.6e-303 1043.5 716 75.0
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 9.9e-303 1043.1 787 70.5
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 1.3e-302 1042.7 716 76.1
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 1.7e-302 1042.3 707 75.7
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 2.2e-302 1042.0 716 75.4
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 2.2e-302 1042.0 705 75.9
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 3.8e-302 1041.2 732 72.7
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 6.4e-302 1040.4 713 74.3
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.1e-301 1039.6 717 75.5
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 1.1e-301 1039.6 716 75.4
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.4e-301 1039.3 720 74.9
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 1.9e-301 1038.9 720 73.8
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 3.2e-301 1038.1 716 73.9
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 4.2e-301 1037.7 744 72.8
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 9.3e-301 1036.6 716 75.7
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 2.7e-300 1035.0 712 75.7
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 7.9e-300 1033.5 712 74.3
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 2.3e-299 1031.9 712 74.2
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 3.9e-299 1031.2 763 72.3
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 3.3e-298 1028.1 729 74.2
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 5.6e-298 1027.3 706 75.2
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 2.1e-297 1025.4 707 75.2
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 3.7e-297 1024.6 706 74.9
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 4.8e-297 1024.2 724 73.6
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 1.1e-296 1023.1 706 73.9
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 1.1e-296 1023.1 716 72.9
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 1.4e-296 1022.7 706 74.1
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 1.4e-296 1022.7 706 73.9
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 1.4e-296 1022.7 706 73.9
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 1.8e-296 1022.3 706 73.8
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 1.8e-296 1022.3 706 73.7
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 4.0e-296 1021.1 713 73.6
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 6.9e-296 1020.4 707 74.7
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 9.0e-296 1020.0 707 74.0
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 1.2e-295 1019.6 716 74.2
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 1.5e-295 1019.2 733 73.0
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 1.3e-294 1016.1 719 73.2
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 1.3e-294 1016.1 710 73.7
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 4.9e-294 1014.2 706 73.5
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 4.9e-294 1014.2 715 74.1
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 6.5e-294 1013.8 731 72.8
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 8.4e-294 1013.4 706 73.4
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 3.2e-293 1011.5 707 73.8
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 4.2e-293 1011.1 734 72.5
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 5.5e-293 1010.7 710 73.5
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 7.1e-293 1010.4 708 73.6
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 1.2e-292 1009.6 733 73.0
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 4.6e-292 1007.7 707 73.1
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 1.3e-291 1006.1 703 72.7
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.0e-291 1005.0 718 73.4
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 6.5e-286 987.3 717 71.3
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.9e-285 985.7 688 74.9
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.2e-284 983.0 718 70.6
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 3.5e-284 981.5 699 71.2
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.1e-277 959.9 716 68.6
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 2.7e-276 955.3 745 67.4
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 4.2e-269 931.4 708 68.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.2e-261 904.0 711 65.8
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.2e-261 904.0 711 65.8
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.7e-260 902.1 764 61.9
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.1e-256 890.2 645 71.9
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.8e-256 889.4 613 74.4
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.8e-256 889.4 704 65.2
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.0e-251 873.6 637 70.6
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.1e-248 863.6 605 72.9
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.6e-247 859.8 713 62.7
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.8e-243 846.3 719 62.0
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.3e-235 819.3 605 71.1
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 2.0e-234 816.2 702 64.0
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 5.7e-234 814.7 574 73.0
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.8e-232 809.7 587 70.0
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 4.1e-232 808.5 694 63.7
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.5e-218 763.5 523 74.2
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.1e-214 748.4 508 74.8
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 8.9e-211 737.6 703 53.3
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 1.2e-202 710.7 694 51.6
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 6.0e-183 645.2 444 74.1
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.2e-176 622.5 460 71.3
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 3.1e-139 500.0 764 40.1
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.1e-139 500.0 350 70.9
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 2.1e-135 487.3 798 36.3
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 6.1e-127 459.1 288 81.6
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 7.0e-115 419.1 275 76.0
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 1.6e-111 407.9 761 35.1
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 4.4e-109 399.8 359 57.7
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 3.7e-108 396.7 274 74.5
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.4e-107 394.8 249 79.5
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.1e-99 368.6 242 75.2
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.4e-99 366.3 237 78.5
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.8e-98 362.5 242 76.0
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 7.8e-90 335.9 246 72.4
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.0e-73 280.8 188 73.9
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 9.6e-72 275.8 223 66.4
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 9.0e-70 269.2 192 74.5
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.1e-63 248.1 195 66.7
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.9e-59 235.0 170 67.6
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 2.1e-58 231.5 163 65.6
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.5e-56 225.3 192 65.6
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 1.5e-53 215.3 156 69.2
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.6e-50 204.1 164 67.1
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 1.2e-45 189.1 180 57.8
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 5.9e-45 186.8 210 51.0
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 6.7e-41 173.3 113 77.0
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 8.8e-41 172.9 119 74.8
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.5e-40 172.2 505 26.3
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 9.1e-38 162.9 111 74.8
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 4.2e-35 154.1 104 74.0
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.2e-34 152.5 111 66.7
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.2e-24 119.4 139 50.4
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.2e-24 119.4 81 72.8
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 7.0e-22 110.2 114 51.8
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 2.9e-20 104.8 114 50.9
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 2.9e-20 104.8 114 50.9
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.1e-18 97.1 93 57.0
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 8.0e-18 96.7 57 77.2
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.4e-16 91.3 75 61.3
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 7.5e-16 90.1 68 64.7
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 9.8e-16 89.7 59 66.1
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.8e-15 88.2 103 50.5
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 2.4e-14 85.1 65 69.2
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 3.1e-14 84.7 77 53.2
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.3e-12 79.3 73 54.8
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 2.3e-12 78.6 91 46.2
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 9.5e-11 73.2 43 74.4
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.4e-09 69.3 63 61.9
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 2.6e-08 65.1 40 75.0
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.2e-06 56.6 39 69.2


User provided reference genes

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