Gene: AT1G71270
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G71270
- Transcript Identifier AT1G71270.1
- Gene Type Coding gene
- Location Chr1 : 26863736-26869817 : positive
Gene Family Information
- ID HOM05D004330
- #Genes/#Species 165/99
- Phylogenetic origin
- ID ORTHO05D005182
- #Genes/#Species 163/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT1G71270.1
- symbol POK
- Alias ATVPS52,ARABIDOPSIS THALIANA VPS52 HOMOLOG,TTD8,T-DNA TRANSMISSION DEFECT 8,VPS52
- full_name POKY POLLEN TUBE
- uniprot Q94KD3
Descriptions
- Description Vps52 / Sac2 family
- Computational description POKY POLLEN TUBE (POK); CONTAINS InterPro DOMAIN/s: Vps52/Sac2 (InterPro:IPR007258); BEST Arabidopsis thaliana protein match is: Vps52 / Sac2 family (TAIR:AT1G71300.1); Has 820 Blast hits to 773 proteins in 240 species: Archae - 10; Bacteria - 70; Metazoa - 261; Fungi - 156; Plants - 82; Viruses - 2; Other Eukaryotes - 239 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032456 | IBA | Gene Ontology | endocytic recycling | 1 |
| GO:0015031 | IEA | GOA Database | protein transport | |
| GO:0042147 | IBA | Gene Ontology | retrograde transport, endosome to Golgi | 1 |
| GO:0006896 | IBA | Gene Ontology | Golgi to vacuole transport | 1 |
| GO:0019953 | IMP | Gene Ontology | sexual reproduction | 2 |
| GO:0009860 | IMP | Gene Ontology | pollen tube growth | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0019905 | IBA | Gene Ontology | syntaxin binding | 1 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0005768 | IEA | GOA Database | endosome | |
| GO:0010008 | IEA | GOA Database | endosome membrane | |
| GO:0000139 | IEA | GOA Database | Golgi membrane | |
| GO:0000139 | IDA | Gene Ontology | Golgi membrane | 2 |
| GO:0005794 | IEA | GOA Database | Golgi apparatus | |
| GO:0005794 | IDA ISM | Gene Ontology | Golgi apparatus | 3 |
| GO:0005829 | IEA | GOA Database | cytosol | |
| GO:0000938 | IDA IBA | Gene Ontology | GARP complex | 1 4 |
| GO:0012505 | IDA | Gene Ontology | endomembrane system | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007258 | Vps52 |
| Mapman id | Description |
|---|---|
| 22.3.4.8.2 | Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.component VPS52/POK |