Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 0.0e+00 1484.2 722 100.0
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1114.4 802 68.7
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1100.5 802 67.5
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1079.3 863 63.5
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 6.4e-310 1067.0 806 66.4
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 6.8e-304 1047.0 802 65.3
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.4e-293 1012.7 790 62.9
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 6.0e-292 1007.3 804 63.7
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 3.0e-291 1005.0 771 65.0
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 2.5e-290 1001.9 802 63.2
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 3.1e-288 995.0 795 63.8
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 4.0e-288 994.6 802 63.5
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 6.9e-288 993.8 807 62.7
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 7.6e-287 990.3 806 62.7
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 2.9e-286 988.4 801 62.3
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 4.2e-285 984.6 801 62.0
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 1.6e-284 982.6 805 61.5
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 1.6e-284 982.6 805 61.5
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 2.1e-284 982.2 804 61.4
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.1e-284 982.2 807 61.2
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 2.7e-284 981.9 815 61.0
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 3.5e-284 981.5 805 61.7
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 4.6e-284 981.1 801 61.9
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 2.3e-283 978.8 807 60.8
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 5.1e-283 977.6 808 60.6
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 2.5e-282 975.3 804 61.9
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 2.5e-282 975.3 808 61.8
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 5.6e-282 974.2 806 61.5
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 5.6e-282 974.2 809 61.6
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 2.8e-281 971.8 805 61.6
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 2.8e-281 971.8 806 60.9
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 4.8e-281 971.1 804 60.7
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 4.8e-281 971.1 804 61.4
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 8.1e-281 970.3 805 61.0
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 8.1e-281 970.3 805 61.4
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 1.1e-280 969.9 805 61.2
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 1.4e-280 969.5 817 61.0
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 1.4e-280 969.5 806 60.5
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 2.4e-280 968.8 805 61.5
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 2.4e-280 968.8 806 60.2
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 3.1e-280 968.4 806 60.9
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 3.1e-280 968.4 804 60.9
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 4.0e-280 968.0 805 61.1
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 5.3e-280 967.6 805 61.5
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 6.9e-280 967.2 808 61.1
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 9.0e-280 966.8 805 60.6
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 1.5e-279 966.1 805 61.1
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 2.6e-279 965.3 806 60.7
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 3.4e-279 964.9 806 60.9
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 5.8e-279 964.1 807 60.0
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 5.8e-279 964.1 819 60.1
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 9.9e-279 963.4 807 60.5
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 9.9e-279 963.4 809 60.9
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 9.9e-279 963.4 804 60.0
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 1.3e-278 963.0 807 60.1
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 1.7e-278 962.6 804 60.7
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 2.2e-278 962.2 810 61.2
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 2.9e-278 961.8 805 60.9
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 8.4e-278 960.3 805 61.0
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 4.2e-277 958.0 805 60.4
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 5.4e-277 957.6 804 59.8
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 2.7e-276 955.3 805 60.0
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 3.5e-276 954.9 810 60.6
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 3.0e-275 951.8 803 60.3
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 1.1e-274 949.9 803 60.4
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 1.5e-274 949.5 803 60.4
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 9.6e-274 946.8 802 59.6
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 2.1e-273 945.7 802 59.6
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 2.1e-273 945.7 805 59.8
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 2.8e-273 945.3 811 58.6
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 3.7e-273 944.9 805 60.2
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 3.7e-273 944.9 805 59.5
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 8.1e-273 943.7 803 59.0
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 1.1e-272 943.3 801 59.8
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 1.8e-272 942.6 803 59.7
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 1.8e-272 942.6 802 59.7
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 4.0e-272 941.4 802 59.1
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 4.0e-272 941.4 802 59.1
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 6.9e-272 940.6 802 58.7
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 1.2e-271 939.9 797 60.2
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 7.6e-271 937.2 803 59.2
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 7.6e-271 937.2 805 58.4
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 2.4e-269 932.2 802 58.9
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 2.4e-269 932.2 780 60.5
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 3.2e-269 931.8 805 58.5
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.2e-269 931.8 790 59.9
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 9.3e-269 930.2 802 59.0
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 9.3e-269 930.2 803 58.9
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 9.3e-269 930.2 884 54.9
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 3.0e-267 925.2 802 58.9
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 5.1e-267 924.5 803 58.7
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 9.6e-266 920.2 763 60.4
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 1.4e-264 916.4 804 58.5
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 5.8e-263 911.0 813 57.4
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 3.8e-262 908.3 805 58.4
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 6.5e-262 907.5 807 57.0
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 3.2e-261 905.2 858 55.0
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 2.7e-260 902.1 805 56.8
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 3.5e-260 901.7 856 54.1
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 4.6e-260 901.4 825 57.5
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 1.9e-258 896.0 805 56.3
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 2.2e-257 892.5 804 57.0
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 3.8e-254 881.7 807 58.0
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 1.0e-251 873.6 820 55.5
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 2.3e-251 872.5 945 51.2
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 5.1e-251 871.3 761 59.3
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 7.2e-245 850.9 811 53.4
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 1.2e-239 833.6 964 49.1
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 1.5e-239 833.2 804 56.0
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 4.2e-237 825.1 816 52.7
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.6e-234 815.8 802 53.9
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 1.3e-230 803.5 971 47.8
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 4.0e-219 765.4 799 49.8
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 2.8e-204 716.1 607 61.0
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 1.5e-202 710.3 807 49.4
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 6.6e-166 588.6 797 44.7
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 1.9e-149 533.9 853 38.8
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 3.1e-131 473.4 381 61.9
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 5.9e-130 469.2 799 36.4
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 3.8e-113 413.3 937 30.7
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.8e-110 404.4 761 36.0
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 4.0e-110 403.3 848 32.8
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 9.1e-99 365.5 403 48.6
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 7.3e-80 302.8 334 50.6
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.1e-67 262.3 192 63.0
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 3.2e-67 260.8 316 44.3
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 1.6e-66 258.5 183 67.8
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 3.9e-65 253.8 215 61.4
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.4e-62 245.4 171 70.8
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 4.8e-55 220.3 269 46.1
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 9.3e-35 152.9 190 47.9
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 2.1e-34 151.8 90 73.3
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.0e-33 149.4 107 68.2
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.7e-32 143.7 130 57.7
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 3.4e-29 134.4 102 62.7
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 7.6e-29 133.3 118 57.6
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 8.4e-28 129.8 99 60.6
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 4.2e-27 127.5 379 27.7
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 3.3e-24 117.9 110 50.0
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.1e-22 110.9 87 64.4
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 2.6e-21 108.2 175 39.4
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 3.8e-20 104.4 108 52.8
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 1.4e-19 102.4 69 71.0
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 3.2e-19 101.3 120 49.2
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 4.2e-19 100.9 156 42.3
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.5e-19 100.5 77 61.0
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.1e-16 92.8 66 57.6
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.5e-16 92.4 211 37.4
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 1.4e-14 85.9 119 43.7
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.5e-13 82.4 50 72.0
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.6e-10 72.4 138 39.1
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 3.6e-10 71.2 59 50.8
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 2.3e-09 68.6 52 63.5
unitig_699.g19210 Utricularia gibba HOM05D004364 ORTHO05D419566 2.6e-08 65.1 75 49.3
CANSAT01G0798 Cannabis sativa HOM05D002747 ORTHO05D003069 1.3e-07 62.8 82 39.0
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 1.3e-07 62.8 82 39.0
TWI18G0343 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 2.8e-07 61.6 84 39.3
Potri.017G056900 Populus trichocarpa HOM05D002747 ORTHO05D003069 4.8e-07 60.8 102 35.3
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 1.1e-06 59.7 129 32.6
Sabra16G0200100 Salix brachista HOM05D002747 ORTHO05D003069 1.1e-06 59.7 133 30.1
Potri.001G316400 Populus trichocarpa HOM05D002747 ORTHO05D003069 1.8e-06 58.9 88 37.5
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 2.4e-06 58.5 57 52.6
PSO357G0187 Papaver somniferum HOM05D002747 ORTHO05D003069 4.1e-06 57.8 76 38.2
Carub.0001s0409 Capsella rubella HOM05D002747 ORTHO05D003069 5.3e-06 57.4 65 43.1
AUR62001114 Chenopodium quinoa HOM05D002747 ORTHO05D003069 5.3e-06 57.4 86 34.9
CARHR004240 Cardamine hirsuta HOM05D002747 ORTHO05D003069 7.0e-06 57.0 81 38.3
AL1G14570 Arabidopsis lyrata HOM05D002747 ORTHO05D003069 9.1e-06 56.6 65 43.1


User provided reference genes

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