Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g1441 Utricularia gibba HOM05D001734 ORTHO05D003483 0.0e+00 2846.6 1422 100.0
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 0.0e+00 1288.1 2063 39.8
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 0.0e+00 1236.1 2062 39.2
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 0.0e+00 1199.9 2062 38.0
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 0.0e+00 1167.1 2122 36.8
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 0.0e+00 1146.3 1867 39.1
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 0.0e+00 1091.3 1838 37.4
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 5.6e-310 1068.1 1844 37.8
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 4.0e-308 1062.0 1831 37.5
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 5.1e-303 1045.0 1836 36.6
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 1.5e-302 1043.5 1876 36.7
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 3.7e-301 1038.9 1841 37.2
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 2.9e-298 1029.2 1820 36.8
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 1.1e-297 1027.3 1860 36.3
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 4.6e-296 1021.9 1808 36.4
Actinidia19322 Actinidia chinensis HOM05D001734 ORTHO05D003483 1.0e-295 1020.8 1848 36.9
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 1.1e-294 1017.3 1843 36.3
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 1.1e-294 1017.3 1932 35.6
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 2.6e-291 1006.1 1853 35.6
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 4.5e-291 1005.4 1844 36.5
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 1.9e-289 1000.0 1891 35.3
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 3.2e-289 999.2 1851 35.7
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 1.6e-288 996.9 1784 37.1
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 3.0e-287 992.6 1857 35.7
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 3.9e-287 992.3 1835 36.3
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 8.8e-287 991.1 1833 36.3
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 3.3e-286 989.2 2022 34.1
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 1.7e-285 986.9 1864 35.5
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 1.3e-282 977.2 1858 35.7
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 3.0e-279 966.1 1906 34.4
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 3.9e-279 965.7 1865 35.5
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 9.7e-278 961.1 1842 35.2
Ciclev10018427m.g Citrus clementina HOM05D001734 ORTHO05D003483 2.8e-277 959.5 1814 35.7
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 6.3e-277 958.4 1837 34.2
CAN.G1305.19 Capsicum annuum HOM05D001734 ORTHO05D003483 1.0e-274 951.0 1321 42.5
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 1.7e-274 950.3 1764 34.9
Gohir.D09G167401 Gossypium hirsutum HOM05D001734 ORTHO05D003483 1.1e-273 947.6 1689 36.3
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 1.4e-273 947.2 1814 34.2
Haze_07473 Corylus avellana HOM05D001734 ORTHO05D003483 1.6e-272 943.7 1342 41.9
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 2.7e-272 943.0 1825 35.1
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 8.0e-272 941.4 1814 34.0
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 2.6e-270 936.4 1853 34.5
Lalb_Chr08g0236501 Lupinus albus HOM05D001734 ORTHO05D003483 5.7e-270 935.3 1329 41.4
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 2.2e-269 933.3 1819 34.4
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 5.3e-268 928.7 1863 34.1
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 3.5e-267 926.0 1843 34.2
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 4.5e-267 925.6 1841 33.8
Sabra15G0101700 Salix brachista HOM05D001734 ORTHO05D003483 1.3e-266 924.1 1188 44.9
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 3.7e-261 906.0 1836 33.8
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 4.1e-260 902.5 1328 40.8
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 1.2e-259 901.0 1848 33.9
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 3.5e-259 899.4 1348 39.2
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 4.5e-259 899.0 1823 33.3
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 9.5e-249 864.8 1843 33.2
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 6.8e-247 858.6 1847 33.6
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 1.2e-246 857.8 1330 38.9
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 9.8e-238 828.2 1827 32.0
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 2.2e-237 827.0 1331 37.7
Sp5g13840 Schrenkiella parvula HOM05D001734 ORTHO05D003483 6.4e-237 825.5 1334 37.7
AL5G27530 Arabidopsis lyrata HOM05D001734 ORTHO05D003483 3.0e-234 816.6 1333 37.6
Ca_16176_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 5.0e-234 815.8 1269 38.9
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 1.9e-233 813.9 1364 36.8
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 3.3e-233 813.1 1357 38.1
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 3.1e-231 806.6 1367 36.6
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 1.2e-224 784.6 1389 35.8
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 6.2e-224 782.3 1089 41.4
TAR629G1256 Trochodendron aralioides HOM05D001734 ORTHO05D003483 3.1e-223 780.0 1032 43.3
CARHR156920 Cardamine hirsuta HOM05D001734 ORTHO05D003483 4.4e-222 776.2 1340 36.0
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 7.5e-222 775.4 1402 35.4
AUR62008208 Chenopodium quinoa HOM05D001734 ORTHO05D003483 9.5e-217 758.4 1255 37.3
arahy.Tifrunner.gnm1.ann1.0L1HI6 Arachis hypogaea HOM05D001734 ORTHO05D003483 2.1e-216 757.3 1037 41.4
Solyc03g112950.4 Solanum lycopersicum HOM05D001734 ORTHO05D003483 9.3e-204 715.3 865 46.2
Psat5g114800 Pisum sativum HOM05D001734 ORTHO05D003483 1.3e-202 711.4 933 43.0
CDE07G1059 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 3.6e-200 703.4 1187 37.1
AUR62030960 Chenopodium quinoa HOM05D001734 ORTHO05D003483 2.9e-197 693.7 1255 35.6
Os01g0106700 Oryza sativa ssp. japonica HOM05D001734 ORTHO05D003483 1.8e-194 684.5 1169 36.1
Zm00001eb126710 Zea mays HOM05D001734 ORTHO05D003483 1.5e-193 681.4 1169 35.7
Nitab4.5_0000984g0090 Nicotiana tabacum HOM05D001734 ORTHO05D003483 2.0e-182 644.4 813 45.8
ATR0730G231 Amborella trichopoda HOM05D001734 ORTHO05D003483 4.9e-181 639.8 1104 36.2
Nitab4.5_0000785g0010 Nicotiana tabacum HOM05D001734 ORTHO05D003483 1.3e-178 631.7 1283 34.2
HPP92_004868 Vanilla planifolia HOM05D001734 ORTHO05D003483 3.8e-173 613.6 934 39.0
FAN05G4580 Fragaria x ananassa HOM05D001734 ORTHO05D003483 1.5e-169 601.7 960 39.7
Pp3c2_23700 Physcomitrium patens HOM05D001734 ORTHO05D003483 5.5e-164 583.2 1180 31.4
Mapoly0081s0051 Marchantia polymorpha HOM05D001734 ORTHO05D003483 1.3e-157 562.0 1199 30.3
Hund02744 Selenicereus undatus HOM05D001734 ORTHO05D003483 1.9e-156 558.1 775 40.9
vmacro19388 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 1.5e-153 548.5 1347 31.0
FAN20G1266 Fragaria x ananassa HOM05D001734 ORTHO05D003483 2.0e-153 548.1 617 49.6
Lj9A448G34 Lonicera japonica HOM05D001734 ORTHO05D003483 8.0e-147 526.2 495 55.8
Peaxi162Scf00009g00114 Petunia axillaris HOM05D001734 ORTHO05D003483 5.5e-140 503.4 654 45.3
AagrBONN_evm.TU.Sc2ySwM_117.1596 Anthoceros agrestis HOM05D001734 ORTHO05D003483 2.5e-132 478.0 1116 30.4
Cc04_g14140 Coffea canephora HOM05D001734 ORTHO05D003483 1.4e-127 462.2 1133 30.4
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 9.5e-116 422.9 841 34.1
TPR.G6034 Trifolium pratense HOM05D001734 ORTHO05D003483 6.2e-115 420.2 577 42.6
VMungo1309G1151 Vigna mungo HOM05D001734 ORTHO05D003483 4.1e-111 407.5 682 38.3
BraA06t25687Z Brassica rapa HOM05D001734 ORTHO05D003483 1.2e-110 406.0 498 43.2
Peaxi162Scf00009g00112 Petunia axillaris HOM05D001734 ORTHO05D003483 1.0e-109 402.9 1134 29.4
FAN20G1174 Fragaria x ananassa HOM05D001734 ORTHO05D003483 3.9e-109 401.0 449 48.6
TPR.G6035 Trifolium pratense HOM05D001734 ORTHO05D003483 5.6e-100 370.5 631 37.7
Lj9A448G32 Lonicera japonica HOM05D001734 ORTHO05D003483 2.5e-92 345.1 502 41.0
Cpa.g.sc76.54 Carica papaya HOM05D001734 ORTHO05D003483 1.1e-82 313.2 344 46.8
Rhsim08G0172200 Rhododendron simsii HOM05D001734 ORTHO05D003483 2.9e-80 305.1 935 27.8
CBR_g292 Chara braunii HOM05D001734 ORTHO05D003483 4.9e-80 304.3 625 31.7
Cpa.g.sc76.53 Carica papaya HOM05D001734 ORTHO05D003483 3.3e-76 291.6 400 42.2
VMungo1309G0494 Vigna mungo HOM05D001734 ORTHO05D003483 4.3e-76 291.2 343 44.3
CSS0012833 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 3.7e-75 288.1 858 27.6
Rhsim08G0157900 Rhododendron simsii HOM05D001734 ORTHO05D003483 5.5e-47 194.5 811 25.6
CBR_g290 Chara braunii HOM05D001734 ORTHO05D003483 3.1e-42 178.7 382 29.3
SEGI_29837 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 1.6e-41 176.4 393 28.8
SMO298G0008 Selaginella moellendorffii HOM05D001734 ORTHO05D003483 5.0e-40 171.4 198 43.9
ATR0730G152 Amborella trichopoda HOM05D001734 ORTHO05D003483 3.3e-36 158.7 232 40.1
SHI16993 Sapria himalayana HOM05D001734 ORTHO05D003483 1.5e-31 143.3 149 51.0
CSS0037969 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 1.0e-29 137.1 107 59.8
HPP92_004845 Vanilla planifolia HOM05D002152 ORTHO05D003483 1.2e-28 133.7 156 45.5
VMungo1309G2093 Vigna mungo HOM05D001734 ORTHO05D003483 4.4e-28 131.7 388 28.6
SEGI_27751 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 1.2e-25 123.6 76 65.8
SHI16994 Sapria himalayana HOM05D001734 ORTHO05D003483 2.7e-25 122.5 87 65.5
arahy.Tifrunner.gnm1.ann1.VRLT2G Arachis hypogaea HOM05D000411 ORTHO05D003483 3.5e-25 122.1 86 62.8
TPR.G29226 Trifolium pratense HOM05D001734 ORTHO05D003483 7.7e-25 120.9 105 61.0
SHI17001 Sapria himalayana HOM05D001734 ORTHO05D003483 4.4e-20 105.1 168 37.5
SEGI_22749 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 2.8e-19 102.4 101 48.5
CSS0000775 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D033929 1.6e-17 96.7 119 42.0
BcaNung07276 Brassica carinata HOM05D001734 ORTHO05D003483 4.5e-17 95.1 150 36.7
Gohir.A09G171650 Gossypium hirsutum HOM05D001734 ORTHO05D003483 1.6e-14 86.7 248 29.0
SHI17003 Sapria himalayana HOM05D001734 ORTHO05D003483 1.0e-13 84.0 89 52.8
CAN.G1305.20 Capsicum annuum HOM05D001734 ORTHO05D003483 1.5e-12 80.1 152 32.2
TAR629G2960 Trochodendron aralioides HOM05D001734 ORTHO05D003483 1.1e-10 73.9 242 24.0
Migut.C00312 Erythranthe guttata HOM05D001734 ORTHO05D003483 1.2e-09 70.5 66 56.1
Lalb_Chr08g0236511 Lupinus albus HOM05D001734 ORTHO05D003483 1.2e-09 70.5 59 54.2
Hma1.2p1_0701F.1_g205860 Hydrangea macrophylla HOM05D001734 ORTHO05D003483 1.6e-09 70.1 74 40.5
Rhsim02G0154200 Rhododendron simsii HOM05D000023 ORTHO05D000014 4.6e-09 68.6 72 48.6
SEGI_30734 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 5.9e-09 68.2 72 52.8
QL05p026262 Quercus lobata HOM05D001734 ORTHO05D003483 1.7e-08 66.6 100 42.0
FAN05G0227 Fragaria x ananassa HOM05D001734 ORTHO05D003483 3.9e-08 65.5 79 43.0
CSS0041674 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D033929 6.6e-08 64.7 125 35.2
QL07p004626 Quercus lobata HOM05D001734 ORTHO05D003483 6.6e-08 64.7 63 60.3
TPR.G6095 Trifolium pratense HOM05D001734 ORTHO05D003483 6.6e-08 64.7 75 42.7
Pp3c6_3460 Physcomitrium patens HOM05D001734 ORTHO05D006943 8.6e-08 64.3 243 24.7
MBI10_g06737_MAGBIO Magnolia biondii HOM05D001734 ORTHO05D003483 1.5e-07 63.5 53 54.7
SHI16999 Sapria himalayana HOM05D001734 ORTHO05D003483 1.5e-07 63.5 47 57.4
Cpa.g.sc1166.1 Carica papaya HOM05D001734 ORTHO05D003483 3.3e-07 62.4 65 52.3
VMungo1309G1926 Vigna mungo HOM05D000002 ORTHO05D000001 7.3e-07 61.2 65 50.8
vmacro19389 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 9.5e-07 60.8 65 53.8
Ca_16175_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 1.6e-06 60.1 51 47.1
Rhsim02G0102500 Rhododendron simsii HOM05D001734 ORTHO05D003483 1.6e-06 60.1 37 70.3
SHI17002 Sapria himalayana HOM05D001734 ORTHO05D003483 2.1e-06 59.7 79 44.3
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 3.6e-06 58.9 33 69.7
CSS0038273 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 6.2e-06 58.2 92 34.8
SHI17017 Sapria himalayana HOM05D001734 ORTHO05D003483 6.2e-06 58.2 74 45.9


User provided reference genes

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