Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZIDD3N Arachis hypogaea HOM05D003441 ORTHO05D004516 3.2e-119 431.8 220 100.0
arahy.Tifrunner.gnm1.ann1.U109MR Arachis hypogaea HOM05D003441 ORTHO05D004516 1.8e-90 336.3 220 81.8
Glyma.08G016400 Glycine max HOM05D003441 ORTHO05D004516 6.9e-90 334.3 246 75.2
Glyma.05G209700 Glycine max HOM05D003441 ORTHO05D004516 2.0e-89 332.8 246 74.8
Phvul.002G291500 Phaseolus vulgaris HOM05D003441 ORTHO05D004516 1.3e-88 330.1 246 74.8
VMungo0251G2080 Vigna mungo HOM05D003441 ORTHO05D004516 2.2e-88 329.3 246 74.4
Ca_10937_v3 Cicer arietinum L. HOM05D003441 ORTHO05D004516 2.4e-87 325.9 246 74.8
Lj4g0015025 Lotus japonicus HOM05D003441 ORTHO05D004516 2.4e-87 325.9 246 74.8
Psat7g031680 Pisum sativum HOM05D003441 ORTHO05D004516 7.1e-87 324.3 248 73.0
Lalb_Chr16g0390181 Lupinus albus HOM05D003441 ORTHO05D004516 6.0e-86 321.2 246 73.2
Lalb_Chr05g0224631 Lupinus albus HOM05D003441 ORTHO05D004516 1.0e-85 320.5 246 72.8
Medtr8g098675 Medicago truncatula HOM05D003441 ORTHO05D004516 5.1e-85 318.2 246 73.2
arahy.Tifrunner.gnm1.ann1.5RI6ER Arachis hypogaea HOM05D003441 ORTHO05D004516 1.1e-84 317.0 246 72.4
HanXRQChr17g0533461 Helianthus annuus HOM05D003441 ORTHO05D004516 7.4e-84 314.3 246 72.4
HanXRQChr06g0165951 Helianthus annuus HOM05D003441 ORTHO05D004516 1.1e-82 310.5 246 70.3
Lj8A218G25 Lonicera japonica HOM05D003441 ORTHO05D004516 1.4e-82 310.1 247 70.0
SalBow1G4213 Salvia bowleyana HOM05D003441 ORTHO05D004516 2.4e-82 309.3 246 70.7
ECA246G2088 Erigeron canadensis HOM05D003441 ORTHO05D004516 5.3e-82 308.1 246 70.7
arahy.Tifrunner.gnm1.ann1.75Q964 Arachis hypogaea HOM05D003441 ORTHO05D004516 6.9e-82 307.8 270 65.9
ATR0661G194 Amborella trichopoda HOM05D003441 ORTHO05D004516 4.5e-81 305.1 246 69.5
Nn6g33339 Nelumbo nucifera HOM05D003441 ORTHO05D004516 7.6e-81 304.3 246 70.3
MSTRG.11971 Avicennia marina HOM05D003441 ORTHO05D004516 1.0e-80 303.9 247 69.6
Duzib205G0291 Durio zibethinus HOM05D003441 ORTHO05D004516 1.0e-80 303.9 246 70.3
Dinv37619 Davidia involucrata HOM05D003441 ORTHO05D004516 1.3e-80 303.5 247 70.0
CSS0029160 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 1.7e-80 303.1 247 70.0
CSS0043381 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 1.7e-80 303.1 247 70.0
SalBow1G5824 Salvia bowleyana HOM05D003441 ORTHO05D004516 4.9e-80 301.6 255 68.2
TAR636G0201 Trochodendron aralioides HOM05D003441 ORTHO05D004516 4.9e-80 301.6 246 70.3
PGR042G0359 Punica granatum HOM05D003441 ORTHO05D004516 6.5e-80 301.2 246 68.7
Aqoxy1G00680 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 8.4e-80 300.8 246 68.7
QL12p032410 Quercus lobata HOM05D003441 ORTHO05D004516 1.1e-79 300.4 246 68.7
Cpa.g.sc180.13 Carica papaya HOM05D003441 ORTHO05D004516 1.9e-79 299.7 249 69.5
CANSAT25G0732 Cannabis sativa HOM05D003441 ORTHO05D004516 2.5e-79 299.3 247 69.2
TWI15G1203 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 2.5e-79 299.3 246 70.7
Manes.02G021700 Manihot esculenta HOM05D003441 ORTHO05D004516 3.2e-79 298.9 246 69.1
TWI15G1061 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 3.2e-79 298.9 246 70.3
Eucgr.E00638 Eucalyptus grandis HOM05D003441 ORTHO05D004516 7.1e-79 297.7 246 68.7
Atru.chr9.2153 Acer truncatum HOM05D003441 ORTHO05D004516 1.2e-78 297.0 246 68.3
Duzib084G0223 Durio zibethinus HOM05D003441 ORTHO05D004516 1.2e-78 297.0 246 69.5
Migut.E01191 Erythranthe guttata HOM05D003441 ORTHO05D004516 1.6e-78 296.6 247 67.6
Solyc08g081340.4 Solanum lycopersicum HOM05D003441 ORTHO05D004516 1.6e-78 296.6 247 68.8
Sopen08g029660 Solanum pennellii HOM05D003441 ORTHO05D004516 1.6e-78 296.6 247 68.8
Carub.0007s3411 Capsella rubella HOM05D003441 ORTHO05D004516 4.6e-78 295.0 248 68.5
TWI81G0502 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 4.6e-78 295.0 246 71.1
Zm00001eb156220 Zea mays HOM05D003441 ORTHO05D004516 6.0e-78 294.7 246 67.5
Potri.001G101300 Populus trichocarpa HOM05D003441 ORTHO05D004516 7.9e-78 294.3 246 67.9
HPP92_021979 Vanilla planifolia HOM05D003441 ORTHO05D004516 7.9e-78 294.3 246 68.7
Gohir.A11G022800 Gossypium hirsutum HOM05D003441 ORTHO05D004516 1.0e-77 293.9 253 67.2
Ah.12g058870 Amaranthus hybridus HOM05D003441 ORTHO05D004516 1.3e-77 293.5 246 67.5
COL.COLO4_34498 Corchorus olitorius HOM05D003441 ORTHO05D004516 1.3e-77 293.5 247 68.4
AUR62010445 Chenopodium quinoa HOM05D003441 ORTHO05D004516 1.8e-77 293.1 246 66.7
Hund10975 Selenicereus undatus HOM05D003441 ORTHO05D004516 1.8e-77 293.1 246 67.1
AUR62030470 Chenopodium quinoa HOM05D003441 ORTHO05D004516 2.3e-77 292.7 246 67.1
FvH4_5g02840 Fragaria vesca HOM05D003441 ORTHO05D004516 2.3e-77 292.7 246 68.3
Gohir.D03G149600 Gossypium hirsutum HOM05D003441 ORTHO05D004516 2.3e-77 292.7 247 68.0
Gorai.003G156900 Gossypium raimondii HOM05D003441 ORTHO05D004516 2.3e-77 292.7 247 68.0
Gorai.007G023800 Gossypium raimondii HOM05D003441 ORTHO05D004516 2.3e-77 292.7 246 67.9
Os01g0691600 Oryza sativa ssp. japonica HOM05D003441 ORTHO05D004516 2.3e-77 292.7 246 67.1
Thecc.03G282800 Theobroma cacao HOM05D003441 ORTHO05D004516 2.3e-77 292.7 246 68.3
CARHR212960 Cardamine hirsuta HOM05D003441 ORTHO05D004516 3.0e-77 292.4 248 68.1
Gohir.D11G022333 Gossypium hirsutum HOM05D003441 ORTHO05D004516 3.0e-77 292.4 252 66.7
AL7G48050 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 3.9e-77 292.0 248 67.7
Carub.0007s3412 Capsella rubella HOM05D003441 ORTHO05D004516 3.9e-77 292.0 249 68.3
PSO478G5020 Papaver somniferum HOM05D003441 ORTHO05D004516 3.9e-77 292.0 246 67.9
Sc07g0009820 Simmondsia chinensis HOM05D003441 ORTHO05D004516 3.9e-77 292.0 253 66.0
Prupe.5G104000 Prunus persica HOM05D003441 ORTHO05D004516 8.7e-77 290.8 246 67.9
AT5G41370 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 1.9e-76 289.7 248 67.3
MELO3C005694.2 Cucumis melo HOM05D003441 ORTHO05D004516 7.4e-76 287.7 246 66.7
THA.LOC104817891 Tarenaya hassleriana HOM05D003441 ORTHO05D004516 7.4e-76 287.7 246 68.7
Actinidia28364 Actinidia chinensis HOM05D003441 ORTHO05D004516 9.6e-76 287.3 247 66.8
EL10Ac5g12531 Beta vulgaris HOM05D003441 ORTHO05D004516 9.6e-76 287.3 248 65.7
RcHm_v2.0_Chr7g0197061 Rosa chinensis HOM05D003441 ORTHO05D004516 9.6e-76 287.3 246 67.1
Sp7g00580 Schrenkiella parvula HOM05D003441 ORTHO05D004516 9.6e-76 287.3 246 67.1
SpUn0010_0060 Schrenkiella parvula HOM05D003441 ORTHO05D004516 9.6e-76 287.3 246 67.1
Thhalv10027651m.g Eutrema salsugineum HOM05D003441 ORTHO05D004516 1.6e-75 286.6 248 67.3
Lsat_1_v5_gn_3_6121 Lactuca sativa HOM05D003441 ORTHO05D004516 2.1e-75 286.2 246 66.3
SHI07186 Sapria himalayana HOM05D003441 ORTHO05D004516 2.1e-75 286.2 268 63.4
Haze_08814 Corylus avellana HOM05D003441 ORTHO05D004516 2.8e-75 285.8 251 65.7
CsaV3_5G002620 Cucumis sativus L. HOM05D003441 ORTHO05D004516 2.8e-75 285.8 246 66.3
CiPaw.12G091100 Carya illinoinensis HOM05D003441 ORTHO05D004516 4.8e-75 285.0 254 64.6
GSVIVG01019392001 Vitis vinifera HOM05D003441 ORTHO05D004516 4.8e-75 285.0 323 55.1
AT5G41360 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 6.3e-75 284.6 248 66.1
BcaB06g27616 Brassica carinata HOM05D003441 ORTHO05D004516 1.1e-74 283.9 246 65.9
Nitab4.5_0001220g0100 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.1e-74 283.9 247 66.8
A04p14500 Brassica napus HOM05D003441 ORTHO05D004516 1.4e-74 283.5 246 65.9
BraA04t17095Z Brassica rapa HOM05D003441 ORTHO05D004516 1.4e-74 283.5 246 65.9
Sed0019074 Sechium edule HOM05D003441 ORTHO05D004516 1.4e-74 283.5 246 66.3
MBI04_g41820_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 1.8e-74 283.1 246 65.4
AL7G48070 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 2.4e-74 282.7 248 65.3
BcaC02g08964 Brassica carinata HOM05D003441 ORTHO05D004516 2.4e-74 282.7 246 65.9
C04p48400 Brassica napus HOM05D003441 ORTHO05D004516 3.1e-74 282.3 246 65.4
BolC4t26434H Brassica oleracea HOM05D003441 ORTHO05D004516 3.1e-74 282.3 246 65.4
MBI04_g35068_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 4.1e-74 282.0 246 65.4
PSO017G3334 Papaver somniferum HOM05D003441 ORTHO05D004516 9.0e-74 280.8 246 65.4
PSO421G0274 Papaver somniferum HOM05D003441 ORTHO05D004516 9.0e-74 280.8 246 65.4
A07p20760 Brassica napus HOM05D003441 ORTHO05D004516 1.2e-73 280.4 242 66.1
BraA07t29768Z Brassica rapa HOM05D003441 ORTHO05D004516 1.2e-73 280.4 242 66.1
MD06G1087900 Malus domestica HOM05D003441 ORTHO05D004516 1.2e-73 280.4 246 67.1
RcHm_v2.0_Chr1g0341861 Rosa chinensis HOM05D003441 ORTHO05D004516 2.0e-73 279.6 259 63.7
BcaB02g07896 Brassica carinata HOM05D003441 ORTHO05D004516 3.4e-73 278.9 246 65.4
FAN18G3267 Fragaria x ananassa HOM05D003441 ORTHO05D004516 5.9e-73 278.1 246 65.9
FAN04G2979 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.3e-72 276.9 246 65.9
SGA_v2.0_scaffold144G35916 Striga asiatica HOM05D003441 ORTHO05D004516 1.7e-72 276.6 246 65.9
FAN13G0786 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.2e-72 276.2 246 65.4
BcaC08g44523 Brassica carinata HOM05D003441 ORTHO05D004516 3.8e-72 275.4 245 64.9
Cfa012202 Carpinus fangiana HOM05D003441 ORTHO05D004516 6.5e-72 274.6 219 69.9
Aqoxy5G02024 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 1.4e-71 273.5 244 64.8
RcHm_v2.0_Chr1g0341621 Rosa chinensis HOM05D003441 ORTHO05D004516 1.4e-71 273.5 246 64.2
Cc08_g15010 Coffea canephora HOM05D003441 ORTHO05D004516 2.5e-71 272.7 247 64.4
DCAR_005566 Daucus carota HOM05D003441 ORTHO05D004516 7.2e-71 271.2 246 63.0
Rhsim02G0234100 Rhododendron simsii HOM05D003441 ORTHO05D004516 7.2e-71 271.2 309 55.7
C06p19750 Brassica napus HOM05D003441 ORTHO05D004516 1.6e-70 270.0 243 64.6
Lj2C182G1 Lonicera japonica HOM05D003441 ORTHO05D004516 2.7e-70 269.2 247 65.2
Aa31LG5G13590 Aethionema arabicum HOM05D003441 ORTHO05D004516 7.9e-70 267.7 249 64.3
Nitab4.5_0004114g0020 Nicotiana tabacum HOM05D003441 ORTHO05D004516 7.9e-70 267.7 247 63.6
CAN.G532.8 Capsicum annuum HOM05D003441 ORTHO05D004516 1.8e-69 266.5 247 64.4
FvH4_7g08220 Fragaria vesca HOM05D003441 ORTHO05D004516 3.0e-69 265.8 248 62.5
Oeu030097.4 Olea europaea HOM05D003441 ORTHO05D004516 3.9e-69 265.4 247 63.2
Mapoly0037s0100 Marchantia polymorpha HOM05D003441 ORTHO05D004516 6.7e-69 264.6 246 63.0
Peaxi162Scf00074g02032 Petunia axillaris HOM05D003441 ORTHO05D004516 6.7e-69 264.6 247 63.2
Pp3c6_13890 Physcomitrium patens HOM05D003441 ORTHO05D004516 6.7e-69 264.6 246 62.2
Sabra01G0076300 Salix brachista HOM05D003441 ORTHO05D004516 8.7e-69 264.2 261 60.2
Nitab4.5_0001522g0040 Nicotiana tabacum HOM05D003441 ORTHO05D004516 4.3e-68 261.9 263 60.1
PGSC0003DMG400012332 Solanum tuberosum HOM05D003441 ORTHO05D004516 7.4e-68 261.2 247 63.2
AagrBONN_evm.TU.Sc2ySwM_368.2338 Anthoceros agrestis HOM05D003441 ORTHO05D004516 9.7e-68 260.8 247 61.9
Ciclev10019088m.g Citrus clementina HOM05D003441 ORTHO05D004516 1.3e-67 260.4 219 68.5
FAN01G0379 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.3e-67 260.4 268 59.0
FAN08G0848 Fragaria x ananassa HOM05D003441 ORTHO05D004516 4.8e-67 258.5 246 62.6
FvH4_7g07850 Fragaria vesca HOM05D003441 ORTHO05D004516 8.2e-67 257.7 256 60.5
FAN10G3500 Fragaria x ananassa HOM05D003441 ORTHO05D004516 4.1e-66 255.4 256 59.8
SMO115G0252 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 3.4e-65 252.3 246 60.2
ClCG01G002520 Citrullus lanatus HOM05D003441 ORTHO05D004516 5.9e-65 251.5 246 61.8
Gohir.A03G019400 Gossypium hirsutum HOM05D003441 ORTHO05D004516 7.2e-63 244.6 222 65.3
FAN06G2516 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.6e-62 242.3 311 50.2
FAN03G2549 Fragaria x ananassa HOM05D003441 ORTHO05D004516 4.6e-62 241.9 244 60.2
unitig_62.g23538 Utricularia gibba HOM05D003441 ORTHO05D004516 4.6e-62 241.9 246 57.7
PGSC0003DMG400026783 Solanum tuberosum HOM05D003441 ORTHO05D004516 7.4e-60 234.6 220 60.9
Nitab4.5_0002290g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.4e-58 230.3 229 60.3
Nitab4.5_0004008g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.8e-58 229.9 229 60.3
HPP92_022012 Vanilla planifolia HOM05D003441 ORTHO05D004516 4.1e-58 228.8 209 64.6
SMO347G0324 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 5.5e-55 218.4 248 52.0
BolC6t37163H Brassica oleracea HOM05D003441 ORTHO05D004516 3.9e-53 212.2 207 60.4
CARHR183180 Cardamine hirsuta HOM05D003441 ORTHO05D004516 5.7e-52 208.4 214 60.3
CBR_g34305 Chara braunii HOM05D003441 ORTHO05D004516 6.3e-51 204.9 234 52.6
TPR.G33074 Trifolium pratense HOM05D003441 ORTHO05D004516 2.2e-48 196.4 165 69.7
FAN13G0171 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.2e-47 192.6 219 55.3
CDE12G0607 Ceratophyllum demersum HOM05D003441 ORTHO05D004516 4.7e-46 188.7 246 48.8
FAN08G2634 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.4e-45 187.2 219 53.9
PRCOL_00001151 Prasinoderma coloniale HOM05D003441 ORTHO05D004516 8.8e-45 184.5 318 40.6
Lsat_1_v5_gn_2_120601 Lactuca sativa HOM05D003441 ORTHO05D004516 1.5e-44 183.7 220 53.6
Cre06.g297016 Chlamydomonas reinhardtii HOM05D003441 ORTHO05D004516 3.3e-44 182.6 298 43.3
MCO01G486 Micromonas commoda HOM05D003441 ORTHO05D004516 1.3e-43 180.6 247 44.1
ECA246G1863 Erigeron canadensis HOM05D003441 ORTHO05D004516 3.7e-43 179.1 246 45.9
SEGI_31025 Sequoiadendron giganteum HOM05D003441 ORTHO05D004516 2.1e-38 163.3 157 56.7
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 1.0e-37 161.0 166 59.0
Lsat_1_v5_gn_2_120581 Lactuca sativa HOM05D003441 ORTHO05D004516 1.2e-36 157.5 94 83.0
Haze_26458 Corylus avellana HOM05D003441 ORTHO05D004516 5.7e-36 155.2 284 39.8
TPR.G12826 Trifolium pratense HOM05D003441 ORTHO05D004516 3.2e-31 139.4 112 69.6
SEGI_12778 Sequoiadendron giganteum HOM05D003441 ORTHO05D022097 1.2e-30 137.5 93 79.6
FAN04G2533 Fragaria x ananassa HOM05D003441 ORTHO05D004516 6.1e-30 135.2 185 48.6
SEGI_39024 Sequoiadendron giganteum HOM05D003441 ORTHO05D004516 1.0e-29 134.4 218 40.8
FAN06G4150 Fragaria x ananassa HOM05D003441 ORTHO05D022097 4.0e-29 132.5 104 71.2
Cfa023957 Carpinus fangiana HOM05D003441 ORTHO05D004516 2.0e-28 130.2 278 33.5
COL.COLO4_31600 Corchorus olitorius HOM05D003441 ORTHO05D022097 1.4e-26 124.0 72 86.1
FAN18G4545 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.8e-22 109.8 75 77.3
FvH4_5g19430 Fragaria vesca HOM05D003441 ORTHO05D004516 1.8e-21 107.1 217 36.9
Lsat_1_v5_gn_7_95160 Lactuca sativa HOM05D003441 ORTHO05D005003 3.0e-21 106.3 156 45.5
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 1.7e-19 100.5 116 55.2
RcHm_v2.0_Chr7g0203931 Rosa chinensis HOM05D003441 ORTHO05D004516 8.3e-19 98.2 179 43.0
Glyma.08G323500 Glycine max HOM05D003441 ORTHO05D004516 2.4e-18 96.7 99 57.6
CAN.G8.43 Capsicum annuum HOM05D000808 ORTHO05D001769 2.3e-16 90.1 50 86.0
QL02p047919 Quercus lobata HOM05D003441 ORTHO05D004516 1.9e-15 87.0 63 74.6
QL02p047967 Quercus lobata HOM05D003441 ORTHO05D004516 1.2e-14 84.3 45 91.1
Actinidia14580 Actinidia chinensis HOM05D003441 ORTHO05D004516 4.1e-10 69.3 106 45.3
Lsat_1_v5_gn_1_103221 Lactuca sativa HOM05D002170 ORTHO05D005003 9.2e-10 68.2 43 81.4
SMO163G0061 Selaginella moellendorffii HOM05D003441 ORTHO05D022097 9.2e-10 68.2 53 58.5


User provided reference genes

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