Gene: FAN08G2634
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN08G2634
- Transcript Identifier FAN08G2634.1
- Gene Type Coding gene
- Location Fvb5-3 : 16946698-16948581 : positive
Gene Family Information
- ID HOM05D003441
- #Genes/#Species 198/99
- Phylogenetic origin
- ID ORTHO05D004516
- #Genes/#Species 178/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id augustus_masked-Fvb5-3-processed-gene-169.7.v1.0.a1
- pacid 50461969
Descriptions
- Description PTHR11274//PTHR11274:SF0 - RAD25/XP-B DNA REPAIR HELICASE // TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPB SUBUNIT
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006289 | IEA | InterPro | nucleotide-excision repair | |
| GO:0006367 | IEA | InterPro | transcription initiation from RNA polymerase II promoter | |
| GO:0009411 | ISO | PLAZA Integrative Orthology | response to UV | AT5G41370 |
| GO:0009636 | ISO | PLAZA Integrative Orthology | response to toxic substance | AT5G41370 |
| GO:0010224 | ISO | PLAZA Integrative Orthology | response to UV-B | AT5G41360 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003678 | IEA | InterPro | DNA helicase activity | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0016787 | IEA | InterPro | hydrolase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G41370 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G41370 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR032438 | ERCC3/RAD25/XPB helicase, C-terminal domain |
| IPR032830 | Helicase XPB/Ssl2, N-terminal domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR001650 | Helicase, C-terminal |
| IPR001161 | Helicase XPB/Ssl2 |
| IPR006935 | Helicase/UvrB, N-terminal |
| Mapman id | Description |
|---|---|
| 14.6.3.2.3 | DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit SSL2/XPB |
| 15.3.3.5.1.3 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component SSL2/XPB |