Gene: AT5G41370

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G41370
  • Transcript Identifier AT5G41370.1
  • Gene Type Coding gene
  • Location Chr5 : 16551337-16555792 : positive

Gene Family Information

  • ID HOM05D003441
  • #Genes/#Species 198/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G41370.1
  • symbol XPB1
  • Alias ATXPB1,ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1
  • full_name homolog of xeroderma pigmentosum complementation group B 1
  • uniprot Q38861

Descriptions

  • Description DNA repair helicase XPB1-like protein
  • Computational description homolog of xeroderma pigmentosum complementation group B 1 (XPB1); FUNCTIONS IN: in 7 functions; INVOLVED IN: response to UV, response to toxin; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: whole plant, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), Xeroderma pigmentosum group B protein (XP-B) (InterPro:IPR001161), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: homolog of Xeroderma pigmentosum complementation group B 2 (TAIR:AT5G41360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006367
IEA
GOA Databasetranscription initiation from RNA polymerase II promoter
GO:0006367
IBA
Gene Ontologytranscription initiation from RNA polymerase II promoter1
GO:0006367
IEA
InterProtranscription initiation from RNA polymerase II promoter
GO:0006289
IEA
GOA Databasenucleotide-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0032508
IEA
GOA DatabaseDNA duplex unwinding
GO:0033683
IBA
Gene Ontologynucleotide-excision repair, DNA incision1
GO:0009411
IEP
Gene Ontologyresponse to UV2
GO:0009636
IMP
Gene Ontologyresponse to toxic substance

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003678
IEA
GOA DatabaseDNA helicase activity
GO:0003678
IEA
InterProDNA helicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016787
IEA
InterProhydrolase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0043138
IBA
Gene Ontology3'-5' DNA helicase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
IEA
GOA Databasenucleus
GO:0005634
HDA
ISM
Gene Ontologynucleus3
GO:0005737
IDA
GOA Databasecytoplasm
GO:0005737
HDA
Gene Ontologycytoplasm3
GO:0005675
IBA
Gene Ontologytranscription factor TFIIH holo complex1
GO:0000112
IBA
Gene Ontologynucleotide-excision repair factor 3 complex1
GO:0097550
IBA
Gene Ontologytranscription preinitiation complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032438 ERCC3/RAD25/XPB helicase, C-terminal domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR032830 Helicase XPB/Ssl2, N-terminal domain
IPR006935 Helicase/UvrB, N-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR001161 Helicase XPB/Ssl2
Mapman id Description
14.6.3.2.3 DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit SSL2/XPB
15.3.3.5.1.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component SSL2/XPB