Gene: Pp3c6_13890

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c6_13890
  • Transcript Identifier Pp3c6_13890V3.4
  • Gene Type Coding gene
  • Location Chr06 : 8822813-8827844 : positive

Gene Family Information

  • ID HOM05D003441
  • #Genes/#Species 198/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c6_13890V3.4
  • pacid 32978840
  • alias Phpat.006G049400
  • alias Pp1s177_124V6
  • alias Phypa_168477
  • uniprot A9T7C2

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006289
IEA
GOA Databasenucleotide-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0010224
ISO
PLAZA Integrative Orthologyresponse to UV-B AT5G41360
GO:0009636
ISO
PLAZA Integrative Orthologyresponse to toxic substance AT5G41370
GO:0009411
ISO
PLAZA Integrative Orthologyresponse to UV AT5G41370
GO:0033683
IBA
GOA Databasenucleotide-excision repair, DNA incision
GO:0006367
IBA
IEA
GOA Databasetranscription initiation from RNA polymerase II promoter
GO:0006367
IEA
InterProtranscription initiation from RNA polymerase II promoter
GO:0032508
IEA
GOA DatabaseDNA duplex unwinding

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043138
IBA
GOA Database3'-5' DNA helicase activity
GO:0003678
IEA
GOA DatabaseDNA helicase activity
GO:0003678
IEA
InterProDNA helicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016787
IEA
InterProhydrolase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G41370
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G41370
GO:0097550
IBA
GOA Databasetranscription preinitiation complex
GO:0000112
IBA
GOA Databasenucleotide-excision repair factor 3 complex
GO:0005675
IBA
GOA Databasetranscription factor TFIIH holo complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR032438 ERCC3/RAD25/XPB helicase, C-terminal domain
IPR001650 Helicase, C-terminal
IPR001161 Helicase XPB/Ssl2
IPR006935 Helicase/UvrB, N-terminal
IPR032830 Helicase XPB/Ssl2, N-terminal domain
Mapman id Description
14.6.3.2.3 DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit SSL2/XPB
15.3.3.5.1.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component SSL2/XPB